JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF9B_chr11_133891438_133961968	0/0	t0108	12769	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0109	12863	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0110	12860	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0111	12867	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0112	12846	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0113	12846	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0114	12846	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0115	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0116	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0117	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0118	12846	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0119	12846	1	0	0	1	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0120	12846	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0121	12769	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0122	12754	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0123	12863	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0124	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0125	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0126	12846	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0127	12846	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0128	12857	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0129	12846	1	0	0	0	0	1	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0130	12769	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0131	12829	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0132	12743	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0133	12863	1	0	1	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9B_chr11_133891438_133961968	0/0	t0134	12835	1	1	0	0	0	0	copy fasta	IGSF9B	chr11	133891438	133961968
IGSF9_chr1_159922041_159950613	0/0	t0001	520	115	5	15	87	2	6	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0002	520	74	6	14	43	4	7	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/1	t0003	520	63	10	21	21	2	8	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	1/0	t0004	520	36	15	10	3	2	5	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0005	524	23	14	2	5	1	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0006	524	12	3	0	7	0	2	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0007	528	11	1	2	8	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0008	524	10	6	1	3	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0009	522	7	0	3	4	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0010	520	5	5	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0011	522	5	0	0	5	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0012	526	4	3	0	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0013	518	4	3	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0014	512	4	2	0	0	0	2	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0015	542	3	0	0	0	0	3	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0016	524	3	1	1	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0017	522	3	0	1	0	0	2	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0018	530	3	3	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0019	540	2	0	0	0	0	2	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0020	532	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0021	512	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0022	528	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0023	526	2	0	1	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613