JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IGSF9_chr1_159922041_159950613	0/0	t0024	522	2	0	1	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0025	516	2	0	1	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0026	528	2	2	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0027	524	2	0	2	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0028	544	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0029	520	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0030	522	1	0	1	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0031	516	1	0	0	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0032	514	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0033	516	1	0	0	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0034	530	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0035	526	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0036	530	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0037	516	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0038	526	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0039	542	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0040	534	1	0	0	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0041	520	1	0	0	0	1	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0042	514	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0043	522	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0044	520	1	0	0	1	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0045	516	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0046	514	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0047	530	1	1	0	0	0	0	copy fasta	IGSF9	chr1	159922041	159950613
IGSF9_chr1_159922041_159950613	0/0	t0048	526	1	0	0	0	0	1	copy fasta	IGSF9	chr1	159922041	159950613
IHH_chr2_219049424_219065921	1/0	t0001	1238	250	61	33	130	5	20	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/1	t0002	1238	113	25	24	40	7	16	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0003	1238	17	0	0	17	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0004	1243	3	0	0	3	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0005	1220	3	0	0	3	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0006	1238	3	0	0	3	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0007	1238	2	2	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0008	1238	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0009	1238	1	0	1	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0010	1238	1	0	1	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0011	1238	1	1	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0012	1238	1	0	1	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0013	1238	1	0	0	1	0	0	copy fasta	IHH	chr2	219049424	219065921
IHH_chr2_219049424_219065921	0/0	t0014	1238	1	1	0	0	0	0	copy fasta	IHH	chr2	219049424	219065921
IHO1_chr3_49194498_49263106	0/0	t0001	916	166	78	36	24	15	13	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	t0002	916	28	5	3	14	3	3	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	t0003	916	1	1	0	0	0	0	copy fasta	IHO1	chr3	49194498	49263106
IHO1_chr3_49194498_49263106	0/0	t0004	840	1	0	1	0	0	0	copy fasta	IHO1	chr3	49194498	49263106
IKBIP_chr12_98619249_98649788	0/0	t0001	1769	174	30	34	79	8	23	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/1	t0002	1769	138	50	23	49	5	10	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	1/0	t0003	1769	37	4	5	20	3	4	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0004	1769	27	0	1	24	0	2	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0005	1769	17	3	4	6	0	4	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0006	1769	6	0	0	6	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0007	1769	2	2	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788