JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IKBIP_chr12_98619249_98649788	0/0	t0008	1769	2	1	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0009	1769	2	0	0	0	0	2	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0010	1769	1	0	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0011	1769	1	1	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0012	1769	1	1	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0013	1769	1	1	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0014	1769	1	1	0	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0015	1769	1	0	0	0	0	1	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0016	1769	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0017	1769	1	0	0	1	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBIP_chr12_98619249_98649788	0/0	t0018	1769	1	0	1	0	0	0	copy fasta	IKBIP	chr12	98619249	98649788
IKBKB_chr8_42266302_42337460	0/1	t0001	1668	220	56	31	101	8	23	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	1/0	t0002	1668	21	13	3	1	0	3	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0003	1668	8	0	6	1	0	1	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0004	1668	6	6	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0005	1668	6	6	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0006	1668	3	3	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0007	1668	3	3	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0008	1668	3	0	3	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0009	1668	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0010	1668	1	0	0	0	0	1	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0011	1668	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0012	1668	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0013	1668	1	1	0	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0014	1668	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0015	1668	1	0	1	0	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKB_chr8_42266302_42337460	0/0	t0016	1668	1	0	0	1	0	0	copy fasta	IKBKB	chr8	42266302	42337460
IKBKE_chr1_206465476_206501889	1/1	t0001	1090	253	40	50	128	8	25	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0002	1090	157	26	28	74	10	19	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0003	1090	12	10	0	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0004	1090	9	5	4	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0005	1090	5	5	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0006	1090	4	3	1	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0007	1090	4	0	2	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0008	1090	4	4	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0009	1090	2	0	0	2	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0010	1090	2	2	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0011	1090	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0012	1090	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0013	1090	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0014	1090	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0015	1090	1	0	1	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0016	1090	1	0	0	1	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0017	1090	1	1	0	0	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKE_chr1_206465476_206501889	0/0	t0018	1090	1	0	0	1	0	0	copy fasta	IKBKE	chr1	206465476	206501889
IKBKG_chrX_154542620_154570033	0/1	t0001	714	168	25	36	83	5	18	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	1/0	t0002	714	37	19	1	3	1	12	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	t0003	714	30	28	2	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	t0004	714	8	0	7	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	t0005	714	1	1	0	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033