JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IKBKG_chrX_154542620_154570033	0/0	t0006	715	1	1	0	0	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKBKG_chrX_154542620_154570033	0/0	t0007	711	1	0	0	1	0	0	copy fasta	IKBKG	chrX	154542620	154570033
IKZF1_chr7_50299716_50410101	1/1	t0001	4696	116	22	17	64	4	7	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0002	4696	33	3	11	11	3	5	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0003	4696	26	2	0	20	1	3	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0004	4697	13	1	6	1	0	5	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0005	4697	9	0	1	7	1	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0006	4697	9	1	4	1	0	3	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0007	4696	8	5	2	0	0	1	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0008	4696	7	5	0	0	0	2	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0009	4696	6	6	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0010	4696	6	0	0	6	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0011	4696	4	2	2	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0012	4696	3	0	3	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0013	4696	3	3	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0014	4696	3	3	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0015	4696	3	0	0	3	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0016	4696	2	0	1	0	0	1	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0017	4696	2	0	0	2	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0018	4696	2	0	0	2	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0019	4695	2	2	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0020	4696	2	0	0	2	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0021	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0022	4697	1	0	1	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0023	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0024	4697	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0025	4696	1	0	1	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0026	4697	1	0	0	0	1	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0027	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0028	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0029	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0030	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0031	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0032	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0033	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0034	4697	1	0	0	0	0	1	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0035	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0036	4697	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0037	4697	1	0	0	0	0	1	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0038	4697	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0039	4697	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0040	4696	1	0	0	0	0	1	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0041	4696	1	0	1	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0042	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0043	4697	1	0	0	0	1	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0044	4697	1	0	0	0	1	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0045	4696	1	0	0	1	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0046	4695	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF1_chr7_50299716_50410101	0/0	t0047	4696	1	1	0	0	0	0	copy fasta	IKZF1	chr7	50299716	50410101
IKZF2_chr2_212994698_213156612	0/1	t0001	7983	47	2	6	32	2	4	copy fasta	IKZF2	chr2	212994698	213156612