JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IKZF2_chr2_212994698_213156612	0/0	t0052	7989	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0053	7989	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0054	7991	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0055	7990	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0056	7989	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0057	7988	1	0	0	0	0	1	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0058	7986	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0059	7985	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0060	7983	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0061	7987	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0062	7990	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0063	7990	1	0	0	0	1	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0064	7991	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0065	7987	1	0	1	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0066	7991	1	0	1	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0067	7980	1	0	1	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0068	7988	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0069	7983	1	0	0	0	0	1	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0070	7996	1	1	0	0	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0071	7989	1	0	0	0	0	1	copy fasta	IKZF2	chr2	212994698	213156612
IKZF2_chr2_212994698_213156612	0/0	t0072	7988	1	0	0	1	0	0	copy fasta	IKZF2	chr2	212994698	213156612
IKZF3_chr17_39752718_39869312	0/1	t0001	8260	59	7	12	26	4	9	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0002	8260	51	6	16	21	1	7	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0003	8261	22	3	5	10	0	4	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0004	8259	14	1	1	11	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0005	8259	10	9	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0006	8261	8	8	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0007	8268	8	8	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0008	8260	6	0	0	6	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0009	8260	5	0	4	0	1	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0010	8261	4	0	1	3	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0011	8261	3	0	0	3	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0012	8265	3	0	2	0	1	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0013	8261	3	3	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0014	8262	3	3	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0015	8259	3	0	0	1	1	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0016	8261	3	0	0	2	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0017	8267	2	0	1	0	1	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0018	8261	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0019	8261	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0020	8262	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0021	8269	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0022	8277	2	2	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0023	8260	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0024	8260	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0025	8260	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0026	8261	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0027	8262	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0028	8260	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0029	8260	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312