JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IKZF3_chr17_39752718_39869312	0/0	t0030	8262	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0031	8262	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0032	8259	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0033	8259	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	1/0	t0034	8259	1	0	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0035	8260	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0036	8266	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0037	8259	1	0	1	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0038	8260	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0039	8268	1	0	0	0	1	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0040	8261	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0041	8260	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0042	8262	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0043	8263	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0044	8261	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0045	8267	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0046	8258	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0047	8258	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0048	8260	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0049	8261	1	0	1	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0050	8261	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0051	8260	1	0	1	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0052	8260	1	0	0	1	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0053	8260	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0054	8267	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0055	8261	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0056	8260	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0057	8262	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0058	8268	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0059	8259	1	1	0	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0060	8259	1	0	0	0	0	1	copy fasta	IKZF3	chr17	39752718	39869312
IKZF3_chr17_39752718_39869312	0/0	t0061	8261	1	0	1	0	0	0	copy fasta	IKZF3	chr17	39752718	39869312
IKZF4_chr12_56016043_56043435	0/1	t0001	3560	238	18	57	136	7	19	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0002	3562	32	24	3	4	0	1	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	1/0	t0003	3556	19	16	1	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0004	3560	13	5	3	0	2	3	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0005	3558	9	9	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0006	3558	3	2	1	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0007	3556	2	2	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0008	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0009	3562	1	1	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0010	3562	1	1	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0011	3562	1	0	0	0	1	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0012	3562	1	1	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0013	3560	1	0	1	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0014	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0015	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0016	3560	1	1	0	0	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0017	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0018	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435