Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ANKRD28_chr3_15662236_15802979	0/0	t0047	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0048	4493	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0049	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0050	4495	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0051	4495	1	0	1	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0052	4494	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0053	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0054	4492	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0055	4494	1	0	0	1	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0056	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0057	4493	1	1	0	0	0	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0058	4493	1	0	0	0	1	0	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD28_chr3_15662236_15802979	0/0	t0059	4492	1	0	0	0	0	1	copy fasta	ANKRD28	chr3	15662236	15802979
ANKRD29_chr18_23593926_23667911	0/0	t0001	2482	138	30	20	69	3	16	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/1	t0002	2482	61	9	17	20	5	9	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0003	2482	40	0	11	24	4	1	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0004	2482	29	0	2	24	0	3	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0005	2482	11	0	2	0	0	9	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0006	2482	11	10	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0007	2482	10	0	0	10	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0008	2483	6	6	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0009	2482	6	5	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0010	2482	4	4	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0011	2482	4	4	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0012	2482	3	3	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0013	2482	3	3	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0014	2482	3	3	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0015	2482	2	2	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0016	2482	2	1	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0017	2482	2	2	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0018	2482	2	0	0	2	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	1/0	t0019	2482	2	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0020	2482	2	0	1	0	0	1	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0021	2482	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0022	2483	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0023	2482	1	0	0	0	0	1	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0024	2482	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0025	2482	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0026	2482	1	0	0	1	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0027	2482	1	0	1	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0028	2482	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0029	2482	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0030	2482	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD29_chr18_23593926_23667911	0/0	t0031	2482	1	1	0	0	0	0	copy fasta	ANKRD29	chr18	23593926	23667911
ANKRD2_chr10_97567779_97588884	1/1	t0001	170	441	95	82	202	16	44	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD2_chr10_97567779_97588884	0/0	t0002	170	1	1	0	0	0	0	copy fasta	ANKRD2	chr10	97567779	97588884
ANKRD30A_chr10_37120598_37237567	1/1	t0001	471	244	67	42	100	12	21	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	t0002	471	16	0	1	11	0	4	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	t0003	471	13	11	2	0	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567
ANKRD30A_chr10_37120598_37237567	0/0	t0004	471	7	7	0	0	0	0	copy fasta	ANKRD30A	chr10	37120598	37237567