JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IKZF4_chr12_56016043_56043435	0/0	t0019	3560	1	0	0	0	0	1	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0020	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF4_chr12_56016043_56043435	0/0	t0021	3560	1	0	0	1	0	0	copy fasta	IKZF4	chr12	56016043	56043435
IKZF5_chr10_122985807_123013795	1/1	t0001	3273	126	25	14	78	2	5	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0002	3273	102	22	31	28	9	12	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0003	3273	78	18	12	41	1	6	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0004	3273	32	0	3	28	0	1	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0005	3273	11	2	2	0	1	6	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0006	3273	10	0	1	0	0	9	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0007	3270	9	9	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0008	3273	6	0	2	0	2	2	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0009	3273	5	4	1	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0010	3273	4	2	1	0	0	1	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0011	3273	4	1	3	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0012	3273	2	2	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0013	3273	2	0	0	1	0	1	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0014	3273	2	2	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0015	3273	1	0	0	0	1	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0016	3273	1	0	0	0	0	1	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0017	3273	1	0	1	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0018	3273	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0019	3273	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0020	3273	1	0	1	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0021	3273	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0022	3273	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0023	3273	1	0	0	1	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0024	3273	1	1	0	0	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IKZF5_chr10_122985807_123013795	0/0	t0025	3273	1	0	0	1	0	0	copy fasta	IKZF5	chr10	122985807	123013795
IK_chr5_140642829_140667480	1/1	t0001	232	285	59	47	132	13	32	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	t0002	232	82	25	7	39	3	8	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	t0003	232	7	7	0	0	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	t0004	232	3	3	0	0	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	t0005	232	2	0	0	2	0	0	copy fasta	IK	chr5	140642829	140667480
IK_chr5_140642829_140667480	0/0	t0006	232	1	0	0	1	0	0	copy fasta	IK	chr5	140642829	140667480
IL10RA_chr11_117981394_118006483	0/1	t0001	1917	204	50	32	92	4	25	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	1/0	t0002	1917	191	28	40	93	12	17	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0003	1917	9	9	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0004	1918	6	5	1	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0005	1917	6	0	1	5	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0006	1917	3	0	0	3	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0007	1917	2	2	0	0	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0008	1917	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0009	1917	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0010	1883	1	0	0	0	0	1	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0011	1917	1	0	0	0	0	1	copy fasta	IL10RA	chr11	117981394	118006483
IL10RA_chr11_117981394_118006483	0/0	t0012	1917	1	0	0	1	0	0	copy fasta	IL10RA	chr11	117981394	118006483
IL10RB_chr21_33261367_33302221	0/0	t0001	962	143	34	22	63	8	16	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/1	t0002	962	99	0	17	61	5	15	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	1/0	t0003	964	78	2	22	47	2	4	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0004	962	48	41	5	1	0	1	copy fasta	IL10RB	chr21	33261367	33302221