JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL10RB_chr21_33261367_33302221	0/0	t0005	963	23	18	5	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0006	961	13	0	2	1	2	8	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0007	963	7	5	1	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0008	963	4	0	1	2	0	1	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0009	962	3	0	0	3	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0010	962	1	0	0	0	0	1	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0011	964	1	0	0	0	1	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0012	963	1	0	1	0	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0013	963	1	0	0	0	0	1	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0014	961	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0015	961	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0016	962	1	0	0	0	0	1	copy fasta	IL10RB	chr21	33261367	33302221
IL10RB_chr21_33261367_33302221	0/0	t0017	962	1	0	0	1	0	0	copy fasta	IL10RB	chr21	33261367	33302221
IL10_chr1_206762602_206777494	1/1	t0001	1094	352	58	50	207	5	30	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0002	1094	48	21	8	5	6	8	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0003	1094	30	5	17	0	4	4	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0004	1093	9	9	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0005	1094	3	0	2	0	1	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0006	1094	2	1	1	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0007	1094	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0008	1093	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0009	1094	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0010	1094	1	0	0	1	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0011	1094	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0012	1094	1	0	0	1	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0013	1094	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL10_chr1_206762602_206777494	0/0	t0014	1093	1	1	0	0	0	0	copy fasta	IL10	chr1	206762602	206777494
IL11RA_chr9_34647185_34666902	1/1	t0001	454	343	78	66	151	8	38	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	t0002	453	16	9	1	0	0	6	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	t0003	466	15	0	4	1	4	6	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	t0004	454	9	7	2	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11RA_chr9_34647185_34666902	0/0	t0005	454	1	0	1	0	0	0	copy fasta	IL11RA	chr9	34647185	34666902
IL11_chr19_55359382_55375463	0/0	t0001	1779	151	16	31	83	4	17	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0002	1779	74	19	8	23	2	22	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	1/0	t0003	1779	35	5	9	18	0	2	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0004	1779	22	19	3	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0005	1779	18	12	5	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/1	t0006	1779	10	0	6	0	3	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0007	1779	8	3	2	0	1	2	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0008	1779	7	5	2	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0009	1779	5	5	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0010	1779	3	3	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0011	1779	2	0	0	0	2	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0012	1779	2	2	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0013	1779	2	2	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0014	1779	2	1	1	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0015	1779	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0016	1779	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0017	1779	1	0	0	0	0	1	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0018	1779	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463