JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL11_chr19_55359382_55375463	0/0	t0019	1752	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0020	1779	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0021	1779	1	0	1	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0022	1779	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0023	1779	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0024	1779	1	0	0	1	0	0	copy fasta	IL11	chr19	55359382	55375463
IL11_chr19_55359382_55375463	0/0	t0025	1779	1	1	0	0	0	0	copy fasta	IL11	chr19	55359382	55375463
IL12A_chr3_159983835_160001019	1/1	t0001	785	327	55	73	152	15	30	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0002	785	69	19	8	25	1	16	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0003	785	18	18	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0004	785	10	0	0	10	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0005	786	4	2	2	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0006	785	2	2	0	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0007	785	1	0	0	1	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12A_chr3_159983835_160001019	0/0	t0008	785	1	0	1	0	0	0	copy fasta	IL12A	chr3	159983835	160001019
IL12B_chr5_159309780_159335487	0/0	t0001	1378	167	23	29	86	9	20	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/1	t0002	1378	143	29	19	84	2	8	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0003	1377	49	24	12	11	1	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	1/0	t0004	1378	18	2	6	0	4	5	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0005	1377	7	7	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0006	1378	3	3	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0007	1378	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0008	1377	1	1	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0009	1377	1	0	0	1	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0010	1378	1	0	0	0	0	1	copy fasta	IL12B	chr5	159309780	159335487
IL12B_chr5_159309780_159335487	0/0	t0011	1378	1	1	0	0	0	0	copy fasta	IL12B	chr5	159309780	159335487
IL12RB1_chr19_18053995_18091934	1/0	t0001	725	182	29	39	87	6	20	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/1	t0002	726	84	40	9	27	4	3	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0003	726	45	0	10	26	2	7	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0004	726	39	2	12	14	5	6	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0005	726	18	9	1	6	0	2	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0006	726	10	5	0	5	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0007	725	7	3	2	1	1	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0008	725	5	0	2	0	0	3	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0009	725	4	1	2	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0010	726	3	2	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0011	726	2	0	0	2	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0012	726	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0013	726	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0014	725	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0015	725	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0016	726	1	0	1	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0017	727	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0018	726	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0019	726	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0020	727	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0021	726	1	1	0	0	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0022	725	1	0	0	0	0	1	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0023	726	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934
IL12RB1_chr19_18053995_18091934	0/0	t0024	727	1	0	0	1	0	0	copy fasta	IL12RB1	chr19	18053995	18091934