JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL12RB2_chr1_67302873_67403724	0/1	t0001	2855	119	6	24	65	5	18	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0002	2855	105	27	20	44	4	10	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	1/0	t0003	2855	59	16	5	34	1	2	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0004	2855	13	10	2	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0005	2855	7	3	4	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0006	2855	7	7	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0007	2855	4	0	0	4	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0008	2855	3	3	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0009	2855	3	0	1	0	2	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0010	2855	3	3	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0011	2855	3	0	2	0	1	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0012	2855	3	0	0	0	1	2	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0013	2855	2	0	2	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0014	2855	2	2	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0015	2855	1	0	0	0	0	1	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0016	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0017	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0018	2865	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0019	2898	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0020	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0021	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0022	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0023	2855	1	0	0	1	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0024	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0025	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0026	2855	1	1	0	0	0	0	copy fasta	IL12RB2	chr1	67302873	67403724
IL12RB2_chr1_67302873_67403724	0/0	t0027	2855	1	0	0	0	0	1	copy fasta	IL12RB2	chr1	67302873	67403724
IL13RA1_chrX_118722606_118799533	1/1	t0001	2713	173	63	27	60	8	13	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0002	2716	84	2	20	53	2	7	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0003	2713	4	0	0	2	0	2	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0004	2713	2	0	0	2	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0005	2718	2	1	0	0	1	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0006	2711	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0007	2713	1	0	0	0	0	1	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0008	2713	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0009	2712	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0010	2713	1	0	1	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0011	2714	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0012	2710	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0013	2718	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0014	2713	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0015	2716	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0016	2712	1	1	0	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0017	2716	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0018	2716	1	0	0	1	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0019	2716	1	0	0	0	0	1	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA1_chrX_118722606_118799533	0/0	t0020	2716	1	0	1	0	0	0	copy fasta	IL13RA1	chrX	118722606	118799533
IL13RA2_chrX_114998982_115022616	1/1	t0001	196	299	80	53	127	11	26	copy fasta	IL13RA2	chrX	114998982	115022616
IL13_chr5_132653173_132666110	0/1	t0001	843	242	41	39	122	8	31	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	1/0	t0002	843	113	8	29	64	2	9	copy fasta	IL13	chr5	132653173	132666110