JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL13_chr5_132653173_132666110	0/0	t0003	843	16	14	2	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0004	843	15	14	1	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0005	843	9	8	1	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0006	843	5	5	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0007	843	2	2	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0008	843	2	2	0	0	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0009	843	2	0	0	2	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0010	843	1	0	0	1	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0011	843	1	0	0	1	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0012	843	1	0	0	0	0	1	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0013	843	1	0	0	1	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0014	843	1	0	0	1	0	0	copy fasta	IL13	chr5	132653173	132666110
IL13_chr5_132653173_132666110	0/0	t0015	843	1	0	0	0	0	1	copy fasta	IL13	chr5	132653173	132666110
IL15RA_chr10_5947384_5982543	1/0	t0001	763	205	9	42	120	12	21	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/1	t0002	763	195	69	20	80	5	20	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0003	763	43	9	14	15	1	4	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0004	763	4	4	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0005	763	3	0	0	0	0	3	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0006	763	1	0	1	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0007	763	1	0	1	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0008	763	1	1	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0009	763	1	1	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0010	763	1	1	0	0	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15RA_chr10_5947384_5982543	0/0	t0011	763	1	0	0	1	0	0	copy fasta	IL15RA	chr10	5947384	5982543
IL15_chr4_141631583_141738987	0/0	t0001	1527	122	28	20	50	6	18	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/1	t0002	1527	34	11	5	13	1	3	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0003	1527	32	1	7	15	3	6	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0004	1527	27	0	1	24	0	2	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	1/0	t0005	1527	24	2	15	0	2	4	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0006	1527	13	4	3	0	3	3	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0007	1527	11	11	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0008	1527	6	6	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0009	1527	5	5	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0010	1527	5	5	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0011	1526	4	3	1	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0012	1527	4	3	1	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0013	1527	2	0	0	2	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0014	1527	2	1	1	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0015	1527	2	2	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0016	1527	1	1	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0017	1527	1	0	0	0	1	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0018	1527	1	1	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0019	1527	1	1	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL15_chr4_141631583_141738987	0/0	t0020	1527	1	1	0	0	0	0	copy fasta	IL15	chr4	141631583	141738987
IL16_chr15_81191879_81319058	0/0	t0001	5636	39	0	6	24	0	9	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0002	5636	39	3	12	12	7	5	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0003	5636	31	0	3	26	0	2	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0004	5636	31	4	3	23	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/1	t0005	5636	22	2	7	6	4	2	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0006	5636	20	7	4	9	0	0	copy fasta	IL16	chr15	81191879	81319058