JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL16_chr15_81191879_81319058	1/0	t0007	5636	15	2	1	8	0	3	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0008	5636	11	4	1	6	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0009	5634	10	0	5	3	1	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0010	5636	9	8	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0011	5636	8	8	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0012	5636	7	0	2	5	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0013	5636	6	0	0	6	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0014	5634	5	3	0	1	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0015	5636	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0016	5636	5	4	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0017	5636	4	1	0	2	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0018	5636	3	1	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0019	5636	3	0	0	3	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0020	5636	3	0	0	3	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0021	5636	3	3	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0022	5636	3	3	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0023	5636	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0024	5636	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0025	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0026	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0027	5636	2	0	0	2	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0028	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0029	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0030	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0031	5636	2	2	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0032	5634	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0033	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0034	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0035	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0036	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0037	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0038	5634	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0039	5634	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0040	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0041	5636	1	0	0	0	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0042	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0043	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0044	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0045	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0046	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0047	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0048	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0049	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0050	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0051	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0052	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0053	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0054	5634	1	0	0	0	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0055	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0056	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058