JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL16_chr15_81191879_81319058	0/0	t0057	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0058	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0059	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0060	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0061	5636	1	0	0	0	0	1	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0062	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0063	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0064	5634	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0065	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0066	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0067	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0068	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0069	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0070	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0071	5636	1	0	1	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0072	5636	1	1	0	0	0	0	copy fasta	IL16	chr15	81191879	81319058
IL16_chr15_81191879_81319058	0/0	t0073	5636	1	0	0	1	0	0	copy fasta	IL16	chr15	81191879	81319058
IL17A_chr6_52181375_52195638	1/0	t0001	1404	314	73	49	164	6	21	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0002	1404	51	9	9	16	3	14	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0003	1404	45	0	4	37	2	2	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/1	t0004	1404	28	5	14	0	3	5	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0005	1404	7	4	3	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0006	1404	3	3	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0007	1404	3	2	1	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0008	1404	1	1	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0009	1404	1	0	0	1	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0010	1404	1	0	0	0	0	1	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0011	1404	1	0	0	1	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0012	1404	1	1	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0013	1404	1	0	0	1	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0014	1404	1	0	0	1	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0015	1404	1	1	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0016	1404	1	0	0	1	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0017	1404	1	1	0	0	0	0	copy fasta	IL17A	chr6	52181375	52195638
IL17A_chr6_52181375_52195638	0/0	t0018	1404	1	0	0	0	0	1	copy fasta	IL17A	chr6	52181375	52195638
IL17B_chr5_149369267_149384292	1/1	t0001	170	386	84	70	168	18	44	copy fasta	IL17B	chr5	149369267	149384292
IL17C_chr16_88633572_88645468	1/1	t0001	467	441	91	84	200	16	48	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	t0002	467	1	0	0	0	0	1	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	t0003	467	1	0	0	0	0	1	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	t0004	467	1	1	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	t0005	467	1	1	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17C_chr16_88633572_88645468	0/0	t0006	467	1	1	0	0	0	0	copy fasta	IL17C	chr16	88633572	88645468
IL17D_chr13_20698699_20728098	0/1	t0001	1448	132	14	16	76	3	22	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0002	1448	91	12	20	45	6	8	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	1/0	t0003	1448	69	49	14	2	2	1	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0004	1448	24	3	6	0	5	10	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0005	1448	8	4	2	0	0	2	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0006	1448	5	3	0	1	0	1	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0007	1448	3	0	0	3	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0008	1448	3	0	0	3	0	0	copy fasta	IL17D	chr13	20698699	20728098