JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL17D_chr13_20698699_20728098	0/0	t0009	1448	3	3	0	0	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0010	1448	3	0	0	3	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0011	1448	2	2	0	0	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0012	1448	1	0	0	1	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0013	1448	1	0	0	1	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17D_chr13_20698699_20728098	0/0	t0014	1448	1	0	0	1	0	0	copy fasta	IL17D	chr13	20698699	20728098
IL17F_chr6_52231681_52249500	1/1	t0001	322	419	83	67	216	12	39	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	t0002	322	6	1	2	0	2	1	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	t0003	322	5	5	0	0	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	t0004	322	1	1	0	0	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17F_chr6_52231681_52249500	0/0	t0005	322	1	0	1	0	0	0	copy fasta	IL17F	chr6	52231681	52249500
IL17RA_chr22_17080000_17120693	0/0	t0001	5966	47	7	5	24	2	9	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0002	5963	37	1	5	20	1	10	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0003	5967	28	1	1	24	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0004	5967	25	0	5	18	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0005	5963	18	0	2	14	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	1/0	t0006	5966	18	0	5	11	1	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0007	5967	15	1	0	13	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0008	5965	11	2	3	2	3	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0009	5968	9	0	4	0	1	4	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0010	5968	9	0	7	2	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0011	5970	8	8	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0012	5965	7	6	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0013	5962	7	7	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/1	t0014	5964	6	0	2	2	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0015	5961	6	6	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0016	5961	6	1	4	0	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0017	5965	5	1	2	0	2	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0018	5962	5	4	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0019	5967	5	0	1	4	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0020	5965	4	0	0	4	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0021	5965	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0022	5964	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0023	5957	4	4	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0024	5965	3	0	2	0	1	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0025	5965	3	3	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0026	5965	3	0	0	1	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0027	5968	3	0	2	0	1	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0028	5965	2	2	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0029	5969	2	2	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0030	5971	2	1	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0031	5965	2	0	2	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0032	5965	2	0	0	2	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0033	5961	2	2	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0034	5965	2	0	2	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0035	5963	2	0	0	2	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0036	5962	2	0	0	0	0	2	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0037	5963	2	0	2	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0038	5971	2	2	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0039	5965	2	2	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693