JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL17RA_chr22_17080000_17120693	0/0	t0090	5968	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0091	5968	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0092	5967	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0093	5966	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0094	5967	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0095	5966	1	0	0	0	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0096	5971	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0097	5971	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0098	5967	1	0	0	0	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0099	5966	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0100	5968	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0101	5968	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0102	5968	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0103	5968	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0104	5963	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0105	5963	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0106	5966	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0107	5961	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0108	5965	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0109	5965	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0110	5965	1	0	0	0	1	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0111	5965	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0112	5965	1	1	0	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0113	5969	1	0	0	0	0	1	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0114	5968	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0115	5965	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0116	5964	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0117	5965	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0118	5963	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0119	5964	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0120	5965	1	0	0	1	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RA_chr22_17080000_17120693	0/0	t0121	5969	1	0	1	0	0	0	copy fasta	IL17RA	chr22	17080000	17120693
IL17RB_chr3_53841568_53870794	1/1	t0001	508	143	31	42	41	12	15	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0002	508	120	27	18	63	2	10	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0003	508	70	22	3	35	0	10	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0004	508	64	12	12	35	1	4	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0005	508	42	3	2	34	0	3	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0006	508	4	0	2	0	1	1	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0007	508	3	0	0	0	0	3	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0008	508	2	2	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0009	508	1	0	1	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RB_chr3_53841568_53870794	0/0	t0010	508	1	1	0	0	0	0	copy fasta	IL17RB	chr3	53841568	53870794
IL17RC_chr3_9912098_9938621	1/1	t0001	247	279	47	54	133	7	36	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	t0002	248	109	49	25	13	10	12	copy fasta	IL17RC	chr3	9912098	9938621
IL17RC_chr3_9912098_9938621	0/0	t0003	247	2	0	1	0	1	0	copy fasta	IL17RC	chr3	9912098	9938621
IL17RD_chr3_57084982_57170353	0/0	t0001	6480	82	3	20	51	1	7	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	1/0	t0002	6479	62	2	1	57	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0003	6478	41	10	11	13	4	3	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/1	t0004	6478	30	7	12	2	1	7	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0005	6478	18	0	3	7	1	7	copy fasta	IL17RD	chr3	57084982	57170353