JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL17RD_chr3_57084982_57170353	0/0	t0006	6478	14	13	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0007	6478	12	0	5	0	1	6	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0008	6479	7	0	3	2	1	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0009	6479	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0010	6478	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0011	6478	6	6	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0012	6479	5	4	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0013	6479	5	5	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0014	6478	4	3	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0015	6479	3	2	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0016	6479	3	3	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0017	6480	2	0	0	1	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0018	6478	2	2	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0019	6479	2	2	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0020	6478	2	0	1	0	1	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0021	6478	2	1	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0022	6479	2	2	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0023	6480	2	0	0	2	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0024	6478	2	1	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0025	6478	2	0	1	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0026	6478	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0027	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0028	6478	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0029	6478	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0030	6479	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0031	6478	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0032	6480	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0033	6478	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0034	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0035	6478	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0036	6478	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0037	6478	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0038	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0039	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0040	6479	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0041	6480	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0042	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0043	6478	1	0	0	0	0	1	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0044	6478	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0045	6478	1	0	0	1	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0046	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0047	6478	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0048	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0049	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0050	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0051	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0052	6478	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0053	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0054	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0055	6479	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353