JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL17RD_chr3_57084982_57170353	0/0	t0056	6478	1	0	1	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17RD_chr3_57084982_57170353	0/0	t0057	6478	1	1	0	0	0	0	copy fasta	IL17RD	chr3	57084982	57170353
IL17REL_chr22_49986811_50017765	0/0	t0001	4994	105	14	12	61	4	14	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0002	4994	71	11	26	25	3	6	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/1	t0003	4994	63	0	6	49	2	5	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0004	4994	42	10	10	8	4	10	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0005	4994	37	1	9	21	3	3	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0006	4994	10	9	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0007	4994	7	7	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0008	4993	6	0	0	6	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0009	4994	6	3	2	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0010	4994	6	6	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0011	4994	5	5	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0012	4994	5	4	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0013	4994	5	0	4	0	1	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0014	4994	5	0	0	5	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0015	4994	4	4	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0016	4934	4	0	1	2	1	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0017	4994	4	4	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0018	4994	4	0	0	4	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0019	4994	3	3	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0020	4994	3	0	0	2	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0021	4994	2	0	0	2	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0022	4994	2	2	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0023	4994	2	0	0	0	0	2	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0024	4994	2	0	0	0	0	2	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0025	4994	2	2	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0026	4994	2	0	0	2	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0027	4994	2	0	2	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0028	4994	2	0	0	2	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0029	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0030	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0031	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0032	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	1/0	t0033	4984	1	0	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0034	4934	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0035	4994	1	0	0	0	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0036	4994	1	0	0	0	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0037	4994	1	0	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0038	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0039	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0040	4994	1	0	0	0	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0041	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0042	5057	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0043	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0044	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0045	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0046	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0047	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0048	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765