JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL17REL_chr22_49986811_50017765	0/0	t0049	4994	1	0	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0050	4994	1	0	0	0	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0051	4934	1	0	0	0	0	1	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0052	4994	1	0	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0053	4994	1	1	0	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0054	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0055	4994	1	0	1	0	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0056	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17REL_chr22_49986811_50017765	0/0	t0057	4994	1	0	0	1	0	0	copy fasta	IL17REL	chr22	49986811	50017765
IL17RE_chr3_9897848_9921397	1/0	t0001	676	222	28	43	113	5	32	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/1	t0002	676	137	56	37	14	13	16	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0003	676	3	3	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0004	676	2	0	0	0	0	2	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0005	676	2	2	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0006	676	1	0	1	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0007	676	1	1	0	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0008	676	1	0	1	0	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL17RE_chr3_9897848_9921397	0/0	t0009	676	1	0	0	1	0	0	copy fasta	IL17RE	chr3	9897848	9921397
IL18BP_chr11_71993909_72007804	0/1	t0001	1114	283	56	56	129	10	31	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	1/0	t0002	1113	73	26	3	35	4	4	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0003	1113	19	3	2	7	0	7	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0004	1113	8	7	1	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0005	1113	5	0	5	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0006	1110	3	0	0	3	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0007	1114	2	0	0	2	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0008	1114	1	1	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0009	1114	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0010	1113	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0011	1114	1	1	0	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0012	1114	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0013	1114	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0014	1114	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0015	1114	1	0	0	1	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18BP_chr11_71993909_72007804	0/0	t0016	1114	1	0	1	0	0	0	copy fasta	IL18BP	chr11	71993909	72007804
IL18R1_chr2_102350796_102403776	1/1	t0001	2524	101	0	19	60	3	17	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0002	2525	65	8	7	38	2	10	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0003	2524	58	20	7	26	2	3	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0004	2525	26	1	4	20	0	1	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0005	2525	15	1	6	4	1	3	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0006	2525	13	7	3	0	3	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0007	2524	12	12	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0008	2508	11	5	5	0	1	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0009	2525	7	0	0	7	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0010	2508	6	0	1	0	3	2	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0011	2524	4	4	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0012	2524	4	3	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0013	2526	4	4	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0014	2510	3	0	0	2	0	1	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0015	2524	3	3	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0016	2525	3	3	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776