JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL18R1_chr2_102350796_102403776	0/0	t0017	2525	3	1	2	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0018	2526	3	3	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0019	2524	2	2	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0020	2525	2	2	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0021	2525	2	2	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0022	2525	2	0	0	2	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0023	2526	2	0	0	2	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0024	2525	2	0	0	2	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0025	2525	1	0	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0026	2525	1	0	0	0	1	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0027	2524	1	0	0	0	0	1	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0028	2524	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0029	2510	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0030	2524	1	0	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0031	2524	1	0	0	0	0	1	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0032	2525	1	0	1	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0033	2525	1	0	0	0	0	1	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0034	2525	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0035	2526	1	1	0	0	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0036	2526	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18R1_chr2_102350796_102403776	0/0	t0037	2526	1	0	0	1	0	0	copy fasta	IL18R1	chr2	102350796	102403776
IL18RAP_chr2_102418160_102457565	0/0	t0001	503	272	85	36	117	8	26	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	1/1	t0002	503	119	2	25	69	3	18	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	t0003	503	14	5	5	0	4	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18RAP_chr2_102418160_102457565	0/0	t0004	503	1	0	0	0	1	0	copy fasta	IL18RAP	chr2	102418160	102457565
IL18_chr11_112138260_112169094	0/0	t0001	534	237	45	32	122	7	31	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0002	534	79	20	26	24	3	6	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/1	t0003	534	18	1	12	1	3	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	1/0	t0004	534	18	12	1	0	1	3	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0005	534	3	3	0	0	0	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0006	534	2	0	0	2	0	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0007	534	2	2	0	0	0	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0008	534	1	1	0	0	0	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0009	534	1	0	1	0	0	0	copy fasta	IL18	chr11	112138260	112169094
IL18_chr11_112138260_112169094	0/0	t0010	534	1	0	0	1	0	0	copy fasta	IL18	chr11	112138260	112169094
IL19_chr1_206765773_206847981	0/0	t0001	814	80	20	26	11	9	14	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	1/0	t0002	814	79	20	5	47	0	6	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/1	t0003	814	70	20	11	25	0	13	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0004	814	59	3	19	29	2	6	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0005	814	38	2	6	28	0	2	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0006	814	29	18	3	5	1	2	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0007	814	2	0	0	2	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0008	814	2	1	0	1	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0009	814	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0010	814	1	0	0	1	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0011	814	1	0	0	0	0	1	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0012	814	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0013	814	1	0	0	1	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0014	814	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981
IL19_chr1_206765773_206847981	0/0	t0015	814	1	1	0	0	0	0	copy fasta	IL19	chr1	206765773	206847981