JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL1A_chr2_112768925_112789493	1/0	t0001	1202	138	18	33	70	3	13	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/1	t0002	1206	89	19	19	27	2	21	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0003	1206	84	16	17	35	4	12	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0004	1206	17	14	3	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0005	1206	17	17	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0006	1206	9	9	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0007	1202	3	3	0	0	0	0	copy fasta	IL1A	chr2	112768925	112789493
IL1A_chr2_112768925_112789493	0/0	t0008	1206	1	0	0	0	1	0	copy fasta	IL1A	chr2	112768925	112789493
IL1B_chr2_112824751_112841779	1/1	t0001	698	374	65	68	191	10	38	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	t0002	698	63	25	11	12	5	10	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	t0003	698	8	7	1	0	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	t0004	698	1	1	0	0	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	t0005	698	1	0	0	0	1	0	copy fasta	IL1B	chr2	112824751	112841779
IL1B_chr2_112824751_112841779	0/0	t0006	698	1	0	0	1	0	0	copy fasta	IL1B	chr2	112824751	112841779
IL1F10_chr2_113062970_113080843	1/1	t0001	555	379	83	56	192	14	32	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	t0002	555	67	9	25	19	2	12	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	t0003	555	4	4	0	0	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	t0004	555	1	0	1	0	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1F10_chr2_113062970_113080843	0/0	t0005	555	1	0	0	1	0	0	copy fasta	IL1F10	chr2	113062970	113080843
IL1R1_chr2_102137746_102184874	0/0	t0001	3474	102	34	6	51	3	8	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0002	3474	39	2	10	21	1	5	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0003	3474	36	0	3	33	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0004	3474	26	13	5	6	0	2	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0005	3474	26	0	3	18	2	3	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0006	3474	16	9	2	3	1	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0007	3474	14	0	0	12	0	2	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	1/1	t0008	3474	13	0	6	0	0	5	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0009	3474	13	1	0	6	0	6	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0010	3474	10	9	1	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0011	3474	10	0	0	1	0	9	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0012	3474	8	0	7	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0013	3474	8	6	1	0	1	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0014	3474	8	0	8	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0015	3474	7	1	4	0	2	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0016	3474	6	0	0	5	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0017	3474	5	5	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0018	3474	4	0	1	3	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0019	3474	4	3	1	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0020	3474	3	3	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0021	3474	3	0	0	3	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0022	3474	2	0	0	2	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0023	3474	2	0	0	2	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0024	3474	2	2	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0025	3474	2	0	0	2	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0026	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0027	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0028	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0029	3474	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0030	3474	1	0	1	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0031	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874