JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL1R1_chr2_102137746_102184874	0/0	t0032	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0033	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0034	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0035	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0036	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0037	3474	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0038	3474	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0039	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0040	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0041	3474	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0042	3474	1	0	0	1	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0043	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0044	3474	1	1	0	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0045	3474	1	0	0	0	0	1	copy fasta	IL1R1	chr2	102137746	102184874
IL1R1_chr2_102137746_102184874	0/0	t0046	3474	1	0	1	0	0	0	copy fasta	IL1R1	chr2	102137746	102184874
IL1R2_chr2_101986960_102033544	1/1	t0001	266	399	68	75	190	16	48	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	t0002	266	18	17	1	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	t0003	266	7	7	0	0	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	t0004	266	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1R2_chr2_101986960_102033544	0/0	t0005	266	1	0	0	1	0	0	copy fasta	IL1R2	chr2	101986960	102033544
IL1RAPL1_chrX_28582446_29961718	0/0	t0001	1524	51	15	5	26	1	4	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0002	1525	26	5	2	14	1	4	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0003	1525	14	1	4	5	1	3	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0004	1524	12	9	1	2	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0005	1524	10	0	4	4	0	2	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0006	1523	4	0	0	4	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0007	1525	3	1	1	0	0	1	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0008	1524	2	2	0	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0009	1524	2	1	1	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0010	1525	2	0	1	1	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0011	1525	2	2	0	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0012	1525	2	0	1	0	1	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0013	1525	1	1	0	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0014	1525	1	0	0	0	0	1	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0015	1526	1	0	0	1	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0016	1526	1	0	0	0	0	1	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL1_chrX_28582446_29961718	0/0	t0017	1526	1	1	0	0	0	0	copy fasta	IL1RAPL1	chrX	28582446	29961718
IL1RAPL2_chrX_104561199_105772829	0/0	t0001	1041	126	28	18	59	5	16	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0002	1041	7	7	0	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0003	1041	2	0	0	2	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0004	1041	2	2	0	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0005	1041	2	0	2	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0006	1041	1	1	0	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAPL2_chrX_104561199_105772829	0/0	t0007	1040	1	0	1	0	0	0	copy fasta	IL1RAPL2	chrX	104561199	105772829
IL1RAP_chr3_190509085_190656514	1/1	t0001	3032	169	50	34	48	9	26	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0002	3032	29	1	2	24	0	2	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0003	3032	17	13	4	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0004	3032	9	5	3	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0005	3033	7	6	1	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0006	3032	7	1	0	0	2	4	copy fasta	IL1RAP	chr3	190509085	190656514