JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL1RAP_chr3_190509085_190656514	0/0	t0007	3032	6	0	0	6	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0008	3032	6	6	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0009	3032	3	3	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0010	3032	2	2	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0011	3032	2	2	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0012	3032	2	0	2	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0013	3032	1	0	1	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0014	3032	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0015	3032	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0016	3080	1	0	0	0	1	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0017	3032	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0018	3032	1	0	0	1	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0019	3032	1	0	0	1	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0020	3032	1	0	0	0	0	1	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0021	3032	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0022	3032	1	0	1	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RAP_chr3_190509085_190656514	0/0	t0023	3032	1	1	0	0	0	0	copy fasta	IL1RAP	chr3	190509085	190656514
IL1RL1_chr2_102306563_102357037	1/1	t0001	327	274	39	55	137	12	29	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	t0002	327	60	24	7	23	2	4	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	t0003	327	10	10	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	t0004	326	3	3	0	0	0	0	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL1_chr2_102306563_102357037	0/0	t0005	327	1	0	0	0	0	1	copy fasta	IL1RL1	chr2	102306563	102357037
IL1RL2_chr2_102182023_102245002	1/1	t0001	838	352	85	57	157	11	40	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0002	838	4	0	4	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0003	838	4	3	1	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0004	838	4	4	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0005	838	4	1	2	0	1	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0006	838	3	3	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0007	838	1	0	0	1	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0008	838	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RL2_chr2_102182023_102245002	0/0	t0009	838	1	1	0	0	0	0	copy fasta	IL1RL2	chr2	102182023	102245002
IL1RN_chr2_113122598_113139014	0/0	t0001	1171	173	41	11	106	8	7	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/1	t0002	1171	129	11	43	59	2	13	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	1/0	t0003	1171	104	34	22	19	7	21	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0004	1171	8	8	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0005	1171	5	0	3	0	0	2	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0006	1171	1	0	0	0	1	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0007	1171	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0008	1171	1	0	0	0	0	1	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0009	1171	1	0	0	1	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0010	1171	1	0	0	1	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0011	1171	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0012	1171	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0013	1171	1	0	1	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL1RN_chr2_113122598_113139014	0/0	t0014	1171	1	1	0	0	0	0	copy fasta	IL1RN	chr2	113122598	113139014
IL20RA_chr6_136994971_137049965	0/1	t0001	1825	132	7	35	62	8	19	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0002	1825	87	38	16	16	2	15	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0003	1825	57	16	8	22	2	9	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	1/0	t0004	1825	19	12	6	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0005	1825	9	9	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965