JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL20RA_chr6_136994971_137049965	0/0	t0006	1825	7	7	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0007	1825	4	3	1	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0008	1825	4	0	0	4	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0009	1825	2	2	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0010	1825	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0011	1825	1	0	1	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0012	1825	1	0	0	0	1	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0013	1825	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0014	1825	1	0	1	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0015	1825	1	0	0	1	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0016	1825	1	0	0	1	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0017	1825	1	0	0	0	0	1	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0018	1825	1	0	0	0	1	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0019	1825	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RA_chr6_136994971_137049965	0/0	t0020	1825	1	1	0	0	0	0	copy fasta	IL20RA	chr6	136994971	137049965
IL20RB_chr3_136952983_137016085	0/1	t0001	994	205	40	37	102	5	20	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	1/0	t0002	994	101	34	18	26	4	18	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0003	994	4	4	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0004	994	3	1	1	0	1	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0005	994	2	2	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0006	994	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0007	994	1	0	0	0	0	1	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0008	994	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0009	994	1	1	0	0	0	0	copy fasta	IL20RB	chr3	136952983	137016085
IL20RB_chr3_136952983_137016085	0/0	t0010	994	1	0	0	0	0	1	copy fasta	IL20RB	chr3	136952983	137016085
IL20_chr1_206860623_206874223	1/1	t0001	754	408	81	80	190	15	40	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0002	755	29	4	4	16	0	5	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0003	754	6	6	0	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0004	754	5	5	0	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0005	754	3	0	0	0	3	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0006	754	1	0	0	1	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0007	754	1	0	1	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0008	754	1	0	1	0	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0009	754	1	0	0	1	0	0	copy fasta	IL20	chr1	206860623	206874223
IL20_chr1_206860623_206874223	0/0	t0010	754	1	0	0	0	0	1	copy fasta	IL20	chr1	206860623	206874223
IL21R_chr16_27397174_27457042	0/0	t0001	3221	147	34	21	67	2	23	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	1/0	t0002	3221	75	9	14	38	2	11	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0003	3224	27	3	0	23	0	1	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/1	t0004	3223	12	1	5	0	3	2	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0005	3225	10	9	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0006	3224	9	4	1	4	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0007	3222	8	7	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0008	3223	8	0	4	0	4	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0009	3225	7	7	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0010	3221	6	1	3	1	0	1	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0011	3221	6	0	6	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0012	3221	5	0	0	5	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0013	3320	5	5	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0014	3222	4	2	2	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0015	3223	4	2	1	1	0	0	copy fasta	IL21R	chr16	27397174	27457042