JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL21R_chr16_27397174_27457042	0/0	t0016	3226	4	4	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0017	3221	4	0	2	0	2	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0018	3222	3	3	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0019	3221	3	0	1	0	2	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0020	3221	2	0	2	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0021	3226	2	2	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0022	3221	2	0	2	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0023	3221	1	0	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0024	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0025	3222	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0026	3221	1	0	0	0	0	1	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0027	3223	1	0	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0028	3223	1	0	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0029	3221	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0030	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0031	3221	1	0	0	0	0	1	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0032	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0033	3222	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0034	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0035	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0036	3224	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0037	3224	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0038	3226	1	1	0	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0039	3221	1	0	0	1	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0040	3222	1	0	1	0	0	0	copy fasta	IL21R	chr16	27397174	27457042
IL21R_chr16_27397174_27457042	0/0	t0041	3221	1	0	0	0	1	0	copy fasta	IL21R	chr16	27397174	27457042
IL21_chr4_122605108_122626066	1/1	t0001	2658	264	76	34	133	9	10	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0002	2658	128	15	30	63	4	16	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0003	2658	10	1	3	0	2	4	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0004	2658	7	0	3	0	1	3	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0005	2658	3	0	0	3	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0006	2658	3	0	0	2	0	1	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0007	2658	2	0	0	2	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0008	2658	2	0	0	2	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0009	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0010	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0011	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0012	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0013	2658	1	0	0	1	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0014	2658	1	0	0	1	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0015	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0016	2658	1	0	0	1	0	0	copy fasta	IL21	chr4	122605108	122626066
IL21_chr4_122605108_122626066	0/0	t0017	2658	1	1	0	0	0	0	copy fasta	IL21	chr4	122605108	122626066
IL22RA1_chr1_24114771_24148140	0/1	t0001	1093	182	22	27	98	10	24	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	1/0	t0002	1093	85	10	13	44	3	14	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0003	1093	52	30	14	0	1	7	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0004	1093	27	17	9	0	0	1	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0005	1093	12	0	11	1	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0006	1093	9	0	0	9	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0007	1093	6	0	4	0	2	0	copy fasta	IL22RA1	chr1	24114771	24148140