JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL22RA1_chr1_24114771_24148140	0/0	t0008	1092	5	3	2	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0009	1092	3	3	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0010	1093	2	2	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0011	1093	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0012	1092	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA1_chr1_24114771_24148140	0/0	t0013	1093	1	1	0	0	0	0	copy fasta	IL22RA1	chr1	24114771	24148140
IL22RA2_chr6_137138820_137178644	0/0	t0001	2102	170	29	23	101	5	12	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0002	2102	59	3	9	36	3	8	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/1	t0003	2102	54	10	7	31	3	2	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0004	2102	35	4	12	16	0	3	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0005	2102	30	17	8	3	1	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0006	2102	23	10	1	4	0	8	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	1/0	t0007	2102	18	1	11	0	0	5	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0008	2102	8	2	5	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0009	2102	4	4	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0010	2102	4	4	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0011	2102	3	0	3	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0012	2102	2	2	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0013	2102	2	2	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0014	2102	2	0	0	0	0	2	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0015	2102	2	2	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0016	2102	1	0	1	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0017	2102	1	0	1	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0018	2102	1	0	0	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0019	2102	1	0	0	1	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0020	2102	1	0	1	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0021	2102	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0022	2102	1	0	0	1	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0023	2102	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0024	2102	1	0	0	1	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0025	2102	1	0	0	0	0	1	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0026	2102	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22RA2_chr6_137138820_137178644	0/0	t0027	2102	1	1	0	0	0	0	copy fasta	IL22RA2	chr6	137138820	137178644
IL22_chr12_68243242_68258604	1/1	t0001	626	439	90	79	203	18	47	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	t0002	626	4	3	0	0	0	1	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	t0003	626	1	1	0	0	0	0	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	t0004	626	1	0	1	0	0	0	copy fasta	IL22	chr12	68243242	68258604
IL22_chr12_68243242_68258604	0/0	t0005	626	1	0	0	1	0	0	copy fasta	IL22	chr12	68243242	68258604
IL23A_chr12_56333884_56345410	1/1	t0001	468	347	81	61	147	16	40	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	t0002	468	2	1	1	0	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23A_chr12_56333884_56345410	0/0	t0003	468	1	0	0	1	0	0	copy fasta	IL23A	chr12	56333884	56345410
IL23R_chr1_67161454_67264979	0/0	t0001	969	76	6	23	34	7	6	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0002	971	73	4	10	48	4	7	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0003	970	63	30	9	21	2	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0004	971	22	16	2	2	0	2	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0005	972	10	2	1	5	0	2	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0006	960	10	6	2	0	1	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0007	971	8	8	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0008	970	7	0	0	5	1	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0009	963	6	0	5	0	1	0	copy fasta	IL23R	chr1	67161454	67264979