JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL23R_chr1_67161454_67264979	0/0	t0010	959	4	3	1	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0011	960	2	0	0	0	0	2	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0012	969	2	0	1	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0013	972	2	1	1	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0014	969	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0015	970	1	0	0	0	0	1	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0016	971	1	0	1	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0017	1031	1	0	0	1	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL23R_chr1_67161454_67264979	0/0	t0018	971	1	1	0	0	0	0	copy fasta	IL23R	chr1	67161454	67264979
IL24_chr1_206892443_206909139	1/1	t0001	1356	255	51	52	108	12	30	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0002	1356	46	13	7	25	0	1	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0003	1356	40	12	3	25	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0004	1356	11	9	2	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0005	1356	7	5	2	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0006	1356	4	0	0	4	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0007	1357	4	0	0	4	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0008	1356	3	0	0	3	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0009	1356	2	0	0	0	0	2	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0010	1357	2	0	2	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0011	1356	2	0	0	2	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0012	1356	1	0	0	1	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0013	1356	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0014	1356	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0015	1356	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0016	1356	1	1	0	0	0	0	copy fasta	IL24	chr1	206892443	206909139
IL24_chr1_206892443_206909139	0/0	t0017	1356	1	0	0	0	0	1	copy fasta	IL24	chr1	206892443	206909139
IL25_chr14_23367809_23381403	1/1	t0001	682	250	14	55	136	12	31	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0002	682	129	66	18	32	3	10	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0003	682	19	10	2	5	0	2	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0004	682	9	1	1	4	2	1	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0005	682	7	0	0	7	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0006	682	5	4	1	0	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0007	682	1	0	0	1	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0008	682	1	0	1	0	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0009	682	1	0	0	1	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0010	682	1	1	0	0	0	0	copy fasta	IL25	chr14	23367809	23381403
IL25_chr14_23367809_23381403	0/0	t0011	682	1	0	0	0	1	0	copy fasta	IL25	chr14	23367809	23381403
IL26_chr12_68196349_68230810	1/1	t0001	551	256	84	50	72	14	34	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	t0002	551	125	14	26	73	2	10	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	t0003	551	19	0	0	19	0	0	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	t0004	551	1	1	0	0	0	0	copy fasta	IL26	chr12	68196349	68230810
IL26_chr12_68196349_68230810	0/0	t0005	551	1	1	0	0	0	0	copy fasta	IL26	chr12	68196349	68230810
IL27RA_chr19_14026762_14058218	1/1	t0001	1040	210	9	53	108	14	24	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0002	1040	122	53	10	43	4	12	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0003	1039	42	8	10	17	0	7	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0004	1040	7	6	1	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0005	1039	6	0	0	3	0	3	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0006	1040	6	5	1	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0007	1040	2	2	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0008	1040	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218