JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL27RA_chr19_14026762_14058218	0/0	t0009	1040	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0010	1040	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0011	1039	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0012	1040	1	0	1	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0013	1039	1	0	0	1	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27RA_chr19_14026762_14058218	0/0	t0014	1040	1	1	0	0	0	0	copy fasta	IL27RA	chr19	14026762	14058218
IL27_chr16_28494362_28511834	1/0	t0001	313	214	53	25	94	6	35	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/1	t0002	313	177	39	45	71	8	13	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	t0003	313	2	2	0	0	0	0	copy fasta	IL27	chr16	28494362	28511834
IL27_chr16_28494362_28511834	0/0	t0004	313	1	0	0	1	0	0	copy fasta	IL27	chr16	28494362	28511834
IL2RA_chr10_6005689_6067367	0/1	t0001	2400	114	20	18	59	2	14	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	1/0	t0002	2400	74	33	7	29	1	3	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0003	2400	63	2	4	53	0	4	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0004	2400	39	12	9	7	6	5	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0005	2400	27	4	7	15	0	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0006	2400	20	0	11	1	3	5	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0007	2400	17	9	3	3	1	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0008	2400	16	2	6	5	2	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0009	2400	11	0	0	9	0	2	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0010	2400	6	0	2	0	0	4	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0011	2400	5	4	0	0	1	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0012	2400	3	0	0	3	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0013	2400	2	2	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0014	2400	2	0	1	0	1	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0015	2400	1	0	0	0	0	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0016	2400	1	0	1	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0017	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0018	2400	1	0	1	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0019	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0020	2400	1	0	0	1	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0021	2400	1	0	0	0	0	1	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0022	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0023	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0024	2400	1	0	0	1	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0025	2400	1	0	0	1	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0026	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0027	2400	1	0	0	0	1	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0028	2400	1	0	0	1	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RA_chr10_6005689_6067367	0/0	t0029	2400	1	1	0	0	0	0	copy fasta	IL2RA	chr10	6005689	6067367
IL2RB_chr22_37120843_37154916	1/0	t0001	2379	253	44	42	135	6	25	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/1	t0002	2379	123	8	24	66	7	17	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0003	2379	9	8	0	0	1	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0004	2381	6	4	2	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0005	2379	4	4	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0006	2379	4	4	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0007	2379	4	4	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0008	2379	4	0	4	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0009	2379	3	0	0	0	1	2	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0010	2379	3	2	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0011	2379	3	3	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916