JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL2RB_chr22_37120843_37154916	0/0	t0012	2379	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0013	2379	3	0	0	3	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0014	2379	3	3	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0015	2379	3	1	1	0	0	1	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0016	2379	2	0	0	2	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0017	2379	2	2	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0018	2379	2	0	2	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0019	2379	2	1	0	0	1	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0020	2379	2	1	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0021	2379	2	2	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0022	2379	2	2	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0023	2379	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0024	2379	1	0	0	0	0	1	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0025	2379	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0026	2379	1	0	1	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0027	2379	1	0	0	1	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0028	2381	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0029	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0030	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0031	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0032	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0033	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RB_chr22_37120843_37154916	0/0	t0034	2379	1	1	0	0	0	0	copy fasta	IL2RB	chr22	37120843	37154916
IL2RG_chrX_71102404_71116577	1/1	t0001	371	281	78	50	116	5	30	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	t0002	370	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2RG_chrX_71102404_71116577	0/0	t0003	374	1	0	0	1	0	0	copy fasta	IL2RG	chrX	71102404	71116577
IL2_chr4_122446470_122461725	1/1	t0001	568	433	95	70	212	18	36	copy fasta	IL2	chr4	122446470	122461725
IL2_chr4_122446470_122461725	0/0	t0002	568	1	1	0	0	0	0	copy fasta	IL2	chr4	122446470	122461725
IL31RA_chr5_55846357_55927850	0/0	t0001	5943	48	7	8	19	6	8	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0002	5950	25	0	2	21	0	2	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0003	5946	18	0	4	7	4	3	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/1	t0004	5950	15	0	6	5	1	2	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0005	5944	15	3	5	7	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0006	5947	10	9	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0007	5947	10	0	8	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0008	5943	9	7	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0009	5948	9	0	0	8	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0010	5949	9	0	0	9	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0011	5946	7	1	3	2	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0012	5947	6	6	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0013	5948	5	4	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	1/0	t0014	5945	5	0	0	3	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0015	5951	5	0	0	4	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0016	5943	5	4	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0017	5943	5	5	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0018	5945	5	1	2	0	1	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0019	5943	5	1	4	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0020	5951	4	0	2	0	0	2	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0021	5948	3	0	0	3	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0022	5945	3	3	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850