JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL31RA_chr5_55846357_55927850	0/0	t0023	5943	3	0	0	3	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0024	5943	3	0	0	3	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0025	5944	3	0	0	3	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0026	5945	3	2	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0027	5947	2	0	0	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0028	5950	2	0	1	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0029	5945	2	0	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0030	5944	2	2	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0031	5949	2	0	1	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0032	5947	2	0	0	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0033	5944	2	1	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0034	5946	2	0	0	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0035	5946	2	0	0	2	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0036	5945	2	2	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0037	5944	2	0	2	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0038	5948	2	2	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0039	5947	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0040	5944	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0041	5949	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0042	5944	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0043	5949	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0044	5943	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0045	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0046	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0047	5947	1	0	0	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0048	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0049	5949	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0050	5947	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0051	5947	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0052	5945	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0053	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0054	5943	1	0	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0055	5947	1	0	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0056	5944	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0057	5945	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0058	5947	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0059	5945	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0060	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0061	5944	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0062	5943	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0063	5945	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0064	5950	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0065	5950	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0066	5950	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0067	5947	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0068	5951	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0069	5947	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0070	5948	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0071	5950	1	0	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0072	5949	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850