JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL31RA_chr5_55846357_55927850	0/0	t0073	5943	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0074	5943	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0075	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0076	5943	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0077	5943	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0078	5943	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0079	5943	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0080	5944	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0081	5945	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0082	5947	1	0	0	1	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0083	5948	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0084	5944	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0085	5945	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0086	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0087	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0088	5944	1	0	0	0	1	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0089	5947	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0090	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0091	5946	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0092	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0093	5946	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0094	5946	1	0	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0095	5944	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0096	5945	1	1	0	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0097	5946	1	0	1	0	0	0	copy fasta	IL31RA	chr5	55846357	55927850
IL31RA_chr5_55846357_55927850	0/0	t0098	5943	1	0	0	0	0	1	copy fasta	IL31RA	chr5	55846357	55927850
IL31_chr12_122167029_122179221	1/1	t0001	433	354	91	73	136	14	38	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0002	433	7	0	0	7	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0003	433	3	3	0	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0004	433	1	1	0	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0005	433	1	1	0	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0006	433	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0007	433	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0008	433	1	0	0	1	0	0	copy fasta	IL31	chr12	122167029	122179221
IL31_chr12_122167029_122179221	0/0	t0009	433	1	0	1	0	0	0	copy fasta	IL31	chr12	122167029	122179221
IL32_chr16_3060640_3074530	1/1	t0001	252	434	87	76	203	18	48	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0002	252	12	0	4	8	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0003	252	4	4	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0004	252	3	3	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0005	252	1	0	0	1	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0006	252	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0007	252	1	0	1	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0008	252	1	1	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL32_chr16_3060640_3074530	0/0	t0009	252	1	1	0	0	0	0	copy fasta	IL32	chr16	3060640	3074530
IL33_chr9_6210807_6262983	0/0	t0001	1870	153	16	34	68	10	25	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0002	1870	124	12	31	67	3	11	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0003	1873	28	26	2	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0004	1873	16	12	1	0	1	2	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	1/1	t0005	1873	11	4	4	0	0	1	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0006	1873	8	8	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983