JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL33_chr9_6210807_6262983	0/0	t0007	1873	7	7	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0008	1866	4	0	0	0	4	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0009	1873	3	2	1	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0010	1873	2	2	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0011	1873	1	0	1	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0012	1873	1	1	0	0	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0013	1870	1	0	0	0	0	1	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0014	1870	1	0	0	1	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0015	1870	1	0	0	1	0	0	copy fasta	IL33	chr9	6210807	6262983
IL33_chr9_6210807_6262983	0/0	t0016	1883	1	0	0	1	0	0	copy fasta	IL33	chr9	6210807	6262983
IL34_chr16_70641559_70665682	0/0	t0001	885	119	18	17	52	9	23	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0002	885	115	51	15	39	3	7	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	1/1	t0003	885	115	1	35	59	6	12	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0004	885	65	0	11	49	0	5	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0005	886	6	6	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0006	885	3	0	2	0	0	1	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0007	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0008	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0009	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0010	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0011	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0012	885	2	2	0	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0013	885	1	0	1	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0014	885	1	0	1	0	0	0	copy fasta	IL34	chr16	70641559	70665682
IL34_chr16_70641559_70665682	0/0	t0015	885	1	0	0	1	0	0	copy fasta	IL34	chr16	70641559	70665682
IL36A_chr2_113000459_113013044	1/1	t0001	414	415	92	76	188	14	43	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	t0002	414	1	0	0	0	0	1	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	t0003	414	1	1	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	t0004	414	1	1	0	0	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	t0005	414	1	0	0	1	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36A_chr2_113000459_113013044	0/0	t0006	414	1	0	0	1	0	0	copy fasta	IL36A	chr2	113000459	113013044
IL36B_chr2_113017089_113057867	0/1	t0001	694	193	11	32	112	6	31	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	1/0	t0002	694	147	39	34	51	9	13	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0003	694	39	30	5	2	0	2	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0004	694	11	11	0	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0005	694	9	0	1	6	2	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0006	694	1	0	1	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0007	694	1	1	0	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0008	694	1	0	0	0	1	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0009	694	1	0	0	1	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36B_chr2_113017089_113057867	0/0	t0010	694	1	0	1	0	0	0	copy fasta	IL36B	chr2	113017089	113057867
IL36G_chr2_112973006_112990658	0/1	t0001	702	343	64	53	177	12	36	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	t0002	702	33	7	0	20	0	6	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	1/0	t0003	702	30	10	11	2	4	2	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	t0004	702	9	9	0	0	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	t0005	702	4	4	0	0	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36G_chr2_112973006_112990658	0/0	t0006	702	1	0	0	1	0	0	copy fasta	IL36G	chr2	112973006	112990658
IL36RN_chr2_113054198_113069744	0/1	t0001	2139	223	32	29	132	6	23	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0002	2139	68	15	2	43	0	8	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0003	2139	52	24	9	10	4	5	copy fasta	IL36RN	chr2	113054198	113069744