JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL36RN_chr2_113054198_113069744	1/0	t0004	2139	43	0	24	11	7	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0005	2139	12	0	0	12	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0006	2139	11	0	8	0	0	3	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0007	2139	9	0	3	0	1	5	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0008	2139	6	6	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0009	2139	5	1	3	0	0	1	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0010	2139	5	5	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0011	2139	4	4	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0012	2139	2	0	0	2	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0013	2139	2	2	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0014	2139	2	2	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0015	2139	1	1	0	0	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0016	2139	1	0	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0017	2139	1	0	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0018	2139	1	0	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0019	2139	1	0	0	1	0	0	copy fasta	IL36RN	chr2	113054198	113069744
IL36RN_chr2_113054198_113069744	0/0	t0020	2139	1	0	0	0	0	1	copy fasta	IL36RN	chr2	113054198	113069744
IL37_chr2_112906165_112923882	1/0	t0001	208	377	78	60	191	7	40	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/1	t0002	208	28	22	2	0	3	0	copy fasta	IL37	chr2	112906165	112923882
IL37_chr2_112906165_112923882	0/0	t0003	208	1	0	0	1	0	0	copy fasta	IL37	chr2	112906165	112923882
IL3RA_chrX_1331785_1387689	0/0	t0001	405	34	8	6	14	2	4	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	1/1	t0002	405	24	2	3	15	0	2	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0003	406	17	10	2	2	0	3	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0004	406	16	2	4	4	2	4	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0005	406	9	0	6	1	1	1	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0006	407	5	3	2	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0007	406	2	2	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0008	405	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0009	406	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0010	406	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0011	405	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0012	406	1	0	0	1	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0013	403	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0014	404	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3RA_chrX_1331785_1387689	0/0	t0015	406	1	1	0	0	0	0	copy fasta	IL3RA	chrX	1331785	1387689
IL3_chr5_132055655_132068204	1/1	t0001	466	441	90	79	212	16	42	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	t0002	466	4	1	0	3	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	t0003	466	2	1	1	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	t0004	466	2	2	0	0	0	0	copy fasta	IL3	chr5	132055655	132068204
IL3_chr5_132055655_132068204	0/0	t0005	466	1	0	0	1	0	0	copy fasta	IL3	chr5	132055655	132068204
IL4I1_chr19_49884654_49901887	1/1	t0001	92	380	81	74	168	13	42	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	t0002	92	41	11	2	23	0	5	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	t0003	92	5	1	0	0	1	3	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	t0004	92	1	1	0	0	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4I1_chr19_49884654_49901887	0/0	t0005	92	1	0	0	1	0	0	copy fasta	IL4I1	chr19	49884654	49901887
IL4R_chr16_27308974_27369778	1/0	t0001	1147	122	19	20	62	10	10	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/1	t0002	1147	116	16	32	46	4	17	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0003	1147	16	0	3	10	0	3	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0004	1147	12	12	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0005	1147	10	10	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778