JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL4R_chr16_27308974_27369778	0/0	t0006	1147	9	8	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0007	1147	9	0	1	7	0	1	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0008	1147	7	7	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0009	1147	4	4	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0010	1147	4	4	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0011	1147	3	3	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0012	1147	3	0	0	0	0	3	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0013	1147	3	3	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0014	1147	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0015	1147	2	2	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0016	1147	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0017	1147	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0018	1147	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0019	1147	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0020	1147	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0021	1147	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0022	1147	1	0	0	1	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0023	1120	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0024	1147	1	0	1	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4R_chr16_27308974_27369778	0/0	t0025	1147	1	1	0	0	0	0	copy fasta	IL4R	chr16	27308974	27369778
IL4_chr5_132668989_132687678	0/0	t0001	154	231	44	28	149	3	7	copy fasta	IL4	chr5	132668989	132687678
IL4_chr5_132668989_132687678	1/1	t0002	154	191	46	52	53	7	31	copy fasta	IL4	chr5	132668989	132687678
IL5RA_chr3_3061324_3115374	1/1	t0001	4477	37	2	7	23	0	3	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0002	4475	25	5	8	8	2	2	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0003	4476	23	2	2	15	1	3	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0004	4476	17	2	1	12	0	2	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0005	4477	16	0	5	8	3	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0006	4477	14	2	7	3	2	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0007	4476	12	0	0	7	0	5	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0008	4477	12	0	0	12	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0009	4475	12	1	7	0	2	2	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0010	4477	10	0	3	7	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0011	4475	10	4	1	3	1	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0012	4478	10	2	1	7	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0013	4476	10	2	2	0	0	6	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0014	4475	9	1	1	5	1	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0015	4476	7	2	0	4	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0016	4478	5	0	0	5	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0017	4478	5	0	0	4	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0018	4477	5	1	0	4	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0019	4472	5	1	4	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0020	4475	5	0	1	3	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0021	4477	5	0	4	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0022	4478	3	0	0	3	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0023	4475	3	0	0	3	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0024	4475	3	0	0	2	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0025	4477	3	0	0	3	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0026	4476	3	3	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0027	4477	2	0	0	2	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0028	4478	2	0	1	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374