JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
IL5RA_chr3_3061324_3115374	0/0	t0079	4475	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0080	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0081	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0082	4479	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0083	4472	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0084	4472	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0085	4475	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0086	4476	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0087	4479	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0088	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0089	4476	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0090	4480	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0091	4485	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0092	4478	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0093	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0094	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0095	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0096	4477	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0097	4485	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0098	4479	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0099	4472	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0100	4481	1	0	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0101	4482	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0102	4471	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0103	4481	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0104	4483	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0105	4476	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0106	4476	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0107	4477	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0108	4477	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0109	4478	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0110	4479	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0111	4480	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0112	4481	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0113	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0114	4481	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0115	4475	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0116	4476	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0117	4478	1	0	1	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0118	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0119	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0120	4477	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0121	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0122	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0123	4477	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0124	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0125	4478	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0126	4482	1	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0127	4469	1	0	0	0	1	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0128	4480	1	0	0	1	0	copy fasta	IL5RA	chr3	3061324	3115374