JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL5RA_chr3_3061324_3115374	0/0	t0179	4482	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0180	4476	1	0	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0181	4478	1	0	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0182	4476	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0183	4477	1	0	1	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0184	4485	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0185	4475	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5RA_chr3_3061324_3115374	0/0	t0186	4493	1	1	0	0	0	0	copy fasta	IL5RA	chr3	3061324	3115374
IL5_chr5_132536445_132548522	1/1	t0001	411	433	97	74	204	18	38	copy fasta	IL5	chr5	132536445	132548522
IL5_chr5_132536445_132548522	0/0	t0002	411	1	1	0	0	0	0	copy fasta	IL5	chr5	132536445	132548522
IL6R_chr1_154400343_154474450	0/0	t0001	4357	79	2	19	48	5	5	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/1	t0002	4357	70	4	18	37	1	9	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	1/0	t0003	4358	42	14	5	14	2	6	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0004	4358	31	10	4	8	0	9	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0005	4358	29	8	8	8	1	4	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0006	4358	11	0	2	7	0	2	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0007	4357	7	0	0	7	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0008	4357	5	0	0	5	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0009	4358	4	4	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0010	4358	4	4	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0011	4357	4	4	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0012	4357	4	0	0	0	1	3	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0013	4354	3	3	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0014	4358	3	0	0	3	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0015	4357	3	0	1	0	0	2	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0016	4358	3	3	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0017	4356	3	2	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0018	4352	3	3	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0019	4357	3	0	0	3	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0020	4357	2	0	0	2	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0021	4358	2	2	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0022	4357	2	0	2	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0023	4355	2	2	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0024	4358	2	2	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0025	4358	1	0	0	0	0	1	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0026	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0027	4352	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0028	4357	1	0	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0029	4357	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0030	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0031	4358	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0032	4356	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0033	4352	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0034	4355	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0035	4357	1	0	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0036	4356	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0037	4357	1	0	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0038	4357	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0039	4352	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0040	4358	1	0	0	1	0	0	copy fasta	IL6R	chr1	154400343	154474450