JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL6R_chr1_154400343_154474450	0/0	t0041	4352	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0042	4352	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0043	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0044	4356	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0045	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0046	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0047	4358	1	1	0	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0048	4358	1	0	1	0	0	0	copy fasta	IL6R	chr1	154400343	154474450
IL6R_chr1_154400343_154474450	0/0	t0049	4358	1	0	0	0	0	1	copy fasta	IL6R	chr1	154400343	154474450
IL6ST_chr5_55930095_55999963	0/0	t0001	6283	77	12	20	34	1	10	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0002	6286	21	1	6	0	3	11	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0003	6282	17	7	2	7	1	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0004	6281	16	0	11	0	3	2	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0005	6291	12	11	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0006	6272	10	9	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0007	6282	9	1	0	7	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0008	6284	8	0	0	6	1	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0009	6287	8	1	2	3	0	2	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0010	6283	6	5	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0011	6276	5	5	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0012	6283	5	0	0	5	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0013	6280	4	0	1	0	2	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0014	6285	4	0	1	3	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0015	6279	3	1	0	0	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0016	6278	3	3	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0017	6292	3	3	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0018	6286	3	3	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0019	6276	2	2	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0020	6277	2	2	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0021	6289	2	0	1	0	1	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0022	6289	2	0	2	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0023	6286	2	2	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0024	6286	2	2	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0025	6287	2	0	2	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0026	6288	2	0	2	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0027	6279	2	0	0	2	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0028	6280	2	0	0	0	2	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0029	6283	2	0	0	2	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0030	6286	2	0	0	2	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	1/0	t0031	6271	2	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0032	6288	2	2	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/1	t0033	6288	2	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0034	6285	2	0	0	2	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0035	6284	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0036	6282	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0037	6277	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0038	6276	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0039	6277	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0040	6278	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0041	6279	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963