JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL6ST_chr5_55930095_55999963	0/0	t0042	6277	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0043	6281	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0044	6279	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0045	6286	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0046	6282	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0047	6281	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0048	6296	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0049	6286	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0050	6281	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0051	6281	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0052	6283	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0053	6283	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0054	6283	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0055	6285	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0056	6283	1	0	1	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0057	6288	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0058	6287	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0059	6283	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0060	6254	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0061	6286	1	0	0	0	0	1	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0062	6289	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0063	6283	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0064	6283	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0065	6284	1	0	0	1	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6ST_chr5_55930095_55999963	0/0	t0066	6283	1	1	0	0	0	0	copy fasta	IL6ST	chr5	55930095	55999963
IL6_chr7_22722200_22736998	1/1	t0001	489	409	99	76	170	16	46	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	t0002	489	8	0	0	8	0	0	copy fasta	IL6	chr7	22722200	22736998
IL6_chr7_22722200_22736998	0/0	t0003	489	1	1	0	0	0	0	copy fasta	IL6	chr7	22722200	22736998
IL7R_chr5_35851891_35884603	1/0	t0001	3205	118	7	24	67	0	19	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0002	3208	57	11	11	30	1	4	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/1	t0003	3205	57	22	16	9	3	6	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0004	3205	48	14	11	9	6	8	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0005	3205	24	7	0	14	0	3	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0006	3205	21	0	0	21	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0007	3205	16	0	1	15	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0008	3205	8	8	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0009	3205	7	0	1	6	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0010	3205	7	0	0	7	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0011	3205	6	6	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0012	3205	5	0	4	0	0	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0013	3205	4	4	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0014	3205	4	3	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0015	3208	3	0	0	3	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0016	3205	3	3	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0017	3205	3	1	2	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0018	3205	2	1	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0019	3205	2	0	0	0	1	1	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0020	3205	2	0	0	0	2	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0021	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0022	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603