JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IL7R_chr5_35851891_35884603	0/0	t0023	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0024	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0025	3205	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0026	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0027	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0028	3205	1	0	0	1	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0029	3205	1	0	0	1	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0030	3205	1	1	0	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0031	3205	1	0	1	0	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0032	3205	1	0	0	1	0	0	copy fasta	IL7R	chr5	35851891	35884603
IL7R_chr5_35851891_35884603	0/0	t0033	3205	1	0	0	0	1	0	copy fasta	IL7R	chr5	35851891	35884603
IL7_chr8_78727772_78810463	1/1	t0001	1483	193	51	38	77	10	15	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0002	1482	52	24	9	11	3	5	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0003	1483	8	7	1	0	0	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0004	1483	3	0	0	3	0	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0005	1482	2	0	0	2	0	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0006	1482	1	0	0	0	1	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0007	1483	1	1	0	0	0	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0008	1483	1	0	0	0	0	1	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0009	1483	1	1	0	0	0	0	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0010	1483	1	0	0	0	0	1	copy fasta	IL7	chr8	78727772	78810463
IL7_chr8_78727772_78810463	0/0	t0011	1483	1	0	0	1	0	0	copy fasta	IL7	chr8	78727772	78810463
IL9R_chrX_155992696_156015817	1/1	t0001	473	209	61	34	87	8	17	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0002	473	4	0	2	2	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0003	473	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0004	475	1	1	0	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0005	473	1	0	0	0	0	1	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0006	473	1	0	1	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0007	473	1	0	1	0	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0008	472	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9R_chrX_155992696_156015817	0/0	t0009	475	1	0	0	1	0	0	copy fasta	IL9R	chrX	155992696	156015817
IL9_chr5_135887246_135900841	1/1	t0001	171	452	88	80	220	16	46	copy fasta	IL9	chr5	135887246	135900841
ILDR1_chr3_121982323_122027247	1/1	t0001	1215	376	89	82	141	16	46	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	t0002	1215	1	1	0	0	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR1_chr3_121982323_122027247	0/0	t0003	1215	1	0	0	1	0	0	copy fasta	ILDR1	chr3	121982323	122027247
ILDR2_chr1_166903187_166980540	0/0	t0001	11441	22	3	3	11	1	4	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0002	11439	16	0	12	0	2	2	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0003	11431	16	0	0	16	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0004	11439	16	2	9	4	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0005	11426	11	0	7	0	3	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0006	11447	11	0	1	8	0	2	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0007	11441	10	0	0	8	1	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0008	11437	9	0	5	3	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0009	11445	9	0	3	6	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0010	11443	8	0	1	7	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0011	11441	8	1	1	6	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0012	11439	8	7	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0013	11439	7	0	0	6	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0014	11429	6	0	0	6	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0015	11415	6	6	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540