JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ILDR2_chr1_166903187_166980540	0/0	t0016	11445	5	2	0	3	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0017	11443	5	0	0	4	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0018	11447	5	0	0	5	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0019	11441	5	0	0	5	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0020	11434	5	5	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0021	11439	4	0	0	4	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0022	11433	4	3	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0023	11443	4	0	0	4	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0024	11436	4	1	3	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0025	11440	3	0	0	0	1	2	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0026	11449	3	1	0	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0027	11443	3	0	1	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0028	11443	3	0	1	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0029	11449	3	0	1	1	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0030	11439	3	0	2	0	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0031	11421	3	3	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0032	11439	3	3	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0033	11437	3	3	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0034	11437	2	2	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0035	11431	2	2	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0036	11449	2	0	0	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0037	11445	2	0	0	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0038	11441	2	0	0	0	0	2	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0039	11425	2	0	0	2	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0040	11437	2	2	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0041	11439	2	0	0	0	0	2	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0042	11439	2	2	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0043	11441	2	2	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0044	11426	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0045	11431	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0046	11439	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0047	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0048	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0049	11433	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0050	11438	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0051	11438	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0052	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0053	11427	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0054	11425	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0055	11440	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0056	11409	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0057	11441	1	0	0	0	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0058	11437	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0059	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0060	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0061	11437	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0062	11440	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0063	11431	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0064	11431	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0065	11431	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540