JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ILDR2_chr1_166903187_166980540	0/0	t0066	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0067	11438	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0068	11451	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0069	11413	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0070	11447	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0071	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0072	11441	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0073	11437	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0074	11443	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0075	11441	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0076	11443	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0077	11441	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0078	11433	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0079	11429	1	0	0	0	1	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0080	11443	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0081	11445	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0082	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0083	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0084	11437	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0085	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0086	11427	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0087	11443	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0088	11428	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0089	11426	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0090	11445	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0091	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0092	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0093	11489	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0094	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0095	11441	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0096	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0097	11419	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0098	11443	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0099	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0100	11440	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0101	11443	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0102	11441	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0103	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0104	11455	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0105	11441	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0106	11445	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0107	11441	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0108	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0109	11437	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0110	11437	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0111	11435	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0112	11435	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0113	11435	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0114	11435	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0115	11440	1	0	0	1	0	0	copy fasta	ILDR2	chr1	166903187	166980540