JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ILDR2_chr1_166903187_166980540	0/0	t0116	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0117	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0118	11445	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0119	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0120	11435	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0121	11445	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0122	11439	1	0	1	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0123	11437	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0124	11435	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0125	11441	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0126	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0127	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0128	11440	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0129	11439	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0130	11447	1	0	0	0	0	1	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0131	11445	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0132	11408	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0133	11441	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILDR2_chr1_166903187_166980540	0/0	t0134	11437	1	1	0	0	0	0	copy fasta	ILDR2	chr1	166903187	166980540
ILF2_chr1_153656788_153675993	1/1	t0001	680	365	80	64	164	16	39	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0002	680	8	8	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0003	680	4	4	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0004	680	3	0	0	0	0	3	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0005	678	3	3	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0006	680	2	0	0	2	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0007	680	2	2	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF2_chr1_153656788_153675993	0/0	t0008	680	1	1	0	0	0	0	copy fasta	ILF2	chr1	153656788	153675993
ILF3_chr19_10649346_10697400	0/1	t0001	3321	187	35	33	90	9	19	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0002	3321	82	3	14	51	5	9	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0003	3321	14	1	3	6	1	3	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	1/0	t0004	3321	7	0	5	0	1	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0005	3312	6	5	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0006	3321	6	5	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0007	3321	5	5	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0008	3321	3	0	2	0	0	1	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0009	3321	3	0	0	3	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0010	3321	3	3	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0011	3321	2	2	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0012	3320	2	2	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0013	3321	2	0	2	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0014	3321	2	0	0	0	0	2	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0015	3321	2	0	0	2	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0016	3312	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0017	3321	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0018	3321	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0019	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0020	3320	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0021	3320	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0022	3321	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0023	3321	1	0	0	0	0	1	copy fasta	ILF3	chr19	10649346	10697400