JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ILF3_chr19_10649346_10697400	0/0	t0024	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0025	3321	1	0	1	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0026	3321	1	1	0	0	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0027	3321	1	0	0	0	0	1	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0028	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0029	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0030	3321	1	0	0	0	0	1	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0031	3321	1	0	0	0	0	1	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0032	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0033	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0034	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILF3_chr19_10649346_10697400	0/0	t0035	3321	1	0	0	1	0	0	copy fasta	ILF3	chr19	10649346	10697400
ILKAP_chr2_238165402_238208695	1/1	t0001	277	420	94	70	200	12	42	copy fasta	ILKAP	chr2	238165402	238208695
ILK_chr11_6598774_6615870	1/1	t0001	401	431	93	76	205	14	41	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0002	401	11	0	7	0	1	3	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0003	401	3	3	0	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0004	401	1	0	0	0	0	1	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0005	401	1	0	0	1	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0006	401	1	0	0	0	1	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0007	401	1	0	0	0	0	1	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0008	401	1	0	1	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0009	401	1	0	1	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILK_chr11_6598774_6615870	0/0	t0010	401	1	0	1	0	0	0	copy fasta	ILK	chr11	6598774	6615870
ILRUN_chr6_34582288_34701767	0/0	t0001	3442	172	25	30	89	6	22	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/1	t0002	3442	34	18	6	3	2	4	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0003	3443	22	0	3	14	1	4	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0004	3442	19	0	0	19	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0005	3443	18	12	5	0	0	1	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0006	3443	16	10	5	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0007	3442	4	3	0	0	1	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0008	3442	4	0	0	4	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0009	3442	4	4	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0010	3442	3	3	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	1/0	t0011	3442	2	0	1	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0012	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0013	3442	1	1	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0014	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0015	3443	1	1	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0016	3442	1	0	0	0	0	1	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0017	3442	1	1	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0018	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0019	3442	1	0	1	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0020	3442	1	0	0	0	0	1	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0021	3442	1	1	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0022	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0023	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0024	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0025	3443	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0026	3442	1	0	0	0	0	1	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0027	3442	1	0	1	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767