JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ILRUN_chr6_34582288_34701767	0/0	t0028	3442	1	0	0	1	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILRUN_chr6_34582288_34701767	0/0	t0029	3443	1	1	0	0	0	0	copy fasta	ILRUN	chr6	34582288	34701767
ILVBL_chr19_15109987_15130786	1/1	t0001	407	437	93	82	192	18	50	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	t0002	407	2	2	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
ILVBL_chr19_15109987_15130786	0/0	t0003	407	1	1	0	0	0	0	copy fasta	ILVBL	chr19	15109987	15130786
IMMP1L_chr11_31427401_31514622	1/1	t0001	233	190	57	35	65	7	24	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	t0002	233	104	26	13	51	1	13	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	t0003	233	2	2	0	0	0	0	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	t0004	233	1	0	0	0	0	1	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP1L_chr11_31427401_31514622	0/0	t0005	233	1	1	0	0	0	0	copy fasta	IMMP1L	chr11	31427401	31514622
IMMP2L_chr7_110657644_111567492	0/0	t0001	1603	25	11	4	2	1	7	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0002	1603	12	3	4	2	0	3	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0003	1603	11	5	2	2	1	1	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0004	1603	9	8	1	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0005	1604	5	4	1	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0006	1603	3	3	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0007	1604	3	2	0	0	0	1	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0008	1603	3	3	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0009	1603	3	3	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0010	1603	2	2	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0011	1603	2	2	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0012	1603	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0013	1603	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0014	1603	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0015	1604	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0016	1604	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMP2L_chr7_110657644_111567492	0/0	t0017	1603	1	1	0	0	0	0	copy fasta	IMMP2L	chr7	110657644	111567492
IMMT_chr2_86138936_86200462	1/1	t0001	413	363	75	62	176	12	36	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	t0002	413	14	10	2	0	0	2	copy fasta	IMMT	chr2	86138936	86200462
IMMT_chr2_86138936_86200462	0/0	t0003	413	1	1	0	0	0	0	copy fasta	IMMT	chr2	86138936	86200462
IMP3_chr15_75634093_75645224	0/1	t0001	578	379	82	69	175	12	40	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	1/0	t0002	578	4	0	0	3	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0003	578	4	4	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0004	578	4	3	1	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0005	578	3	2	1	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0006	578	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0007	578	1	0	0	1	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0008	578	1	1	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0009	578	1	0	1	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0010	578	1	1	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP3_chr15_75634093_75645224	0/0	t0011	578	1	1	0	0	0	0	copy fasta	IMP3	chr15	75634093	75645224
IMP4_chr2_130337897_130352967	1/1	t0001	1536	205	42	32	102	7	20	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0002	1536	125	8	19	80	1	17	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0003	1536	17	16	1	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0004	1536	16	1	6	0	5	4	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0005	1538	15	15	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0006	1536	7	0	6	1	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0007	1536	6	6	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0008	1537	5	3	2	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0009	1536	1	0	0	0	1	0	copy fasta	IMP4	chr2	130337897	130352967