JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IMP4_chr2_130337897_130352967	0/0	t0010	1536	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0011	1536	1	0	0	0	0	1	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0012	1536	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0013	1536	1	0	0	1	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMP4_chr2_130337897_130352967	0/0	t0014	1536	1	1	0	0	0	0	copy fasta	IMP4	chr2	130337897	130352967
IMPA1_chr8_81651914_81691325	1/1	t0001	2536	127	33	38	28	7	19	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0002	2536	74	1	10	57	3	3	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0003	2536	31	0	11	13	0	7	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0004	2536	26	0	2	20	0	4	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0005	2536	22	5	3	11	1	2	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0006	2536	21	0	0	19	0	2	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0007	2536	15	7	3	0	1	4	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0008	2534	11	10	1	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0009	2536	11	9	2	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0010	2536	9	9	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0011	2536	7	6	1	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0012	2536	5	5	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0013	2534	4	3	1	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0014	2536	3	0	0	3	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0015	2536	2	2	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0016	2536	1	0	0	1	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0017	2534	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0018	2534	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0019	2536	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0020	2536	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0021	2536	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0022	2536	1	0	1	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0023	2536	1	0	1	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0024	2536	1	1	0	0	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0025	2536	1	0	0	0	0	1	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0026	2536	1	0	0	1	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA1_chr8_81651914_81691325	0/0	t0027	2536	1	0	0	1	0	0	copy fasta	IMPA1	chr8	81651914	81691325
IMPA2_chr18_11976507_12035877	1/1	t0001	583	352	89	67	146	14	34	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0002	583	6	6	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0003	583	2	1	1	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0004	583	1	0	0	1	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0005	583	1	1	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0006	583	1	1	0	0	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPA2_chr18_11976507_12035877	0/0	t0007	583	1	0	0	1	0	0	copy fasta	IMPA2	chr18	11976507	12035877
IMPACT_chr18_24421670_24458531	0/0	t0001	2772	213	23	47	111	9	23	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	1/0	t0002	2772	94	23	9	53	3	5	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0003	2769	21	2	9	1	2	7	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0004	2772	12	11	1	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0005	2772	11	8	2	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0006	2772	7	7	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0007	2772	4	4	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0008	2772	4	0	0	4	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0009	2772	3	3	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0010	2772	3	3	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0011	2772	3	0	0	3	0	0	copy fasta	IMPACT	chr18	24421670	24458531