JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IMPACT_chr18_24421670_24458531	0/0	t0012	2772	3	0	0	3	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0013	2772	3	1	2	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0014	2772	2	2	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0015	2772	2	2	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0016	2772	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0017	2772	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0018	2772	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0019	2772	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0020	2772	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0021	2772	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0022	2772	1	0	1	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0023	2772	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0024	2772	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0025	2772	1	0	1	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0026	2772	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0027	2772	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0028	2769	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0029	2772	1	1	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0030	2772	1	0	0	1	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/1	t0031	2772	1	0	0	0	0	0	copy fasta	IMPACT	chr18	24421670	24458531
IMPACT_chr18_24421670_24458531	0/0	t0032	2772	1	0	0	0	0	1	copy fasta	IMPACT	chr18	24421670	24458531
IMPDH1_chr7_128387277_128414982	1/1	t0001	812	395	83	71	185	11	43	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0002	812	6	6	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0003	812	5	0	4	0	0	1	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0004	812	3	0	0	3	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0005	812	2	0	1	0	1	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0006	812	1	1	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0007	812	1	1	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH1_chr7_128387277_128414982	0/0	t0008	812	1	1	0	0	0	0	copy fasta	IMPDH1	chr7	128387277	128414982
IMPDH2_chr3_49019325_49034398	1/1	t0001	107	304	84	56	104	16	42	copy fasta	IMPDH2	chr3	49019325	49034398
IMPG1_chr6_75916114_76077662	1/0	t0001	1150	211	48	35	107	6	14	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0002	1146	25	0	0	25	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/1	t0003	1150	20	0	10	1	3	5	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0004	1150	18	7	9	0	1	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0005	1154	13	12	1	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0006	1150	3	2	1	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0007	1150	3	3	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0008	1150	3	0	0	0	0	3	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0009	1150	1	1	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0010	1150	1	0	0	1	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0011	1150	1	0	1	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0012	1150	1	0	0	0	0	1	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0013	1150	1	1	0	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG1_chr6_75916114_76077662	0/0	t0014	1150	1	0	1	0	0	0	copy fasta	IMPG1	chr6	75916114	76077662
IMPG2_chr3_101217546_101325575	0/1	t0001	4573	94	21	16	43	4	9	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0002	4593	22	2	5	13	1	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0003	4595	16	1	2	9	1	3	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0004	4623	10	1	0	8	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0005	4597	9	1	2	5	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0006	4605	9	1	3	3	0	2	copy fasta	IMPG2	chr3	101217546	101325575