JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IMPG2_chr3_101217546_101325575	0/0	t0007	4615	9	2	0	7	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0008	4583	8	0	7	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0009	4619	8	1	0	4	0	3	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0010	4619	7	1	1	3	1	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0011	4617	7	0	3	1	2	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0012	4617	6	1	0	5	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0013	4621	6	0	0	4	1	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0014	4627	6	0	1	3	0	2	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0015	4625	6	1	1	3	1	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0016	4625	5	0	0	5	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	1/0	t0017	4627	5	0	0	2	1	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0018	4579	5	4	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0019	4591	4	2	1	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0020	4611	4	0	2	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0021	4623	4	1	0	3	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0022	4629	4	0	1	3	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0023	4575	3	0	0	1	0	2	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0024	4599	3	0	0	3	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0025	4607	3	1	0	1	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0026	4621	3	0	1	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0027	4635	3	0	1	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0028	4583	2	0	0	0	2	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0029	4573	2	0	2	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0030	4645	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0031	4601	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0032	4603	2	0	2	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0033	4609	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0034	4609	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0035	4617	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0036	4621	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0037	4631	2	0	1	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0038	4617	2	2	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0039	4615	2	0	2	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0040	4631	2	0	1	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0041	4633	2	0	0	2	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0042	4621	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0043	4573	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0044	4589	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0045	4575	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0046	4577	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0047	4589	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0048	4609	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0049	4581	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0050	4571	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0051	4571	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0052	4573	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0053	4573	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0054	4589	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0055	4573	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0056	4591	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575