JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
IMPG2_chr3_101217546_101325575	0/0	t0057	4593	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0058	4643	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0059	4595	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0060	4647	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0061	4683	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0062	4601	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0063	4601	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0064	4603	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0065	4603	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0066	4605	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0067	4607	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0068	4607	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0069	4607	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0070	4611	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0071	4611	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0072	4611	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0073	4613	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0074	4617	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0075	4619	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0076	4619	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0077	4619	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0078	4621	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0079	4623	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0080	4623	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0081	4645	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0082	4585	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0083	4623	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0084	4595	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0085	4611	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0086	4613	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0087	4627	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0088	4635	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0089	4643	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0090	4645	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0091	4625	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0092	4585	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0093	4619	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0094	4629	1	0	1	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0095	4627	1	0	0	0	1	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0096	4637	1	0	0	0	1	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0097	4643	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0098	4581	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0099	4612	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0100	4614	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0101	4616	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0102	4622	1	0	0	1	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0103	4620	1	1	0	0	0	0	copy fasta	IMPG2	chr3	101217546	101325575
IMPG2_chr3_101217546_101325575	0/0	t0104	4573	1	0	0	0	0	1	copy fasta	IMPG2	chr3	101217546	101325575
INAFM1_chr19_47269885_47280723	1/0	t0001	411	203	56	45	74	8	19	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/1	t0002	411	151	24	25	72	8	21	copy fasta	INAFM1	chr19	47269885	47280723