JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INAFM1_chr19_47269885_47280723	0/0	t0003	411	20	0	0	20	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0004	411	7	7	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0005	411	5	0	0	5	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0006	411	3	0	0	3	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0007	411	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0008	411	2	2	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM1_chr19_47269885_47280723	0/0	t0009	411	1	1	0	0	0	0	copy fasta	INAFM1	chr19	47269885	47280723
INAFM2_chr15_40318692_40331715	1/1	t0001	2563	104	41	17	24	8	12	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0002	2562	102	0	19	72	1	10	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0003	2563	46	3	9	23	3	8	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0004	2563	34	7	11	6	3	7	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0005	2572	30	3	3	21	0	3	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0006	2563	9	1	5	0	2	1	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0007	2563	9	8	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0008	2562	6	5	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0009	2563	6	4	1	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0010	2563	5	0	0	5	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0011	2563	5	5	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0012	2563	4	0	0	0	0	4	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0013	2572	4	4	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0014	2563	4	3	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0015	2563	4	0	0	4	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0016	2572	3	0	1	0	0	2	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0017	2546	3	0	0	3	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0018	2563	2	0	1	0	1	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0019	2563	2	0	0	2	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0020	2562	2	2	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0021	2563	2	2	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0022	2572	1	0	0	0	0	1	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0023	2572	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0024	2563	1	1	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0025	2563	1	1	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0026	2563	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0027	2562	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0028	2563	1	1	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0029	2562	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0030	2562	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0031	2562	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0032	2563	1	0	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0033	2563	1	0	1	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0034	2563	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0035	2563	1	1	0	0	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0036	2562	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAFM2_chr15_40318692_40331715	0/0	t0037	2544	1	0	0	1	0	0	copy fasta	INAFM2	chr15	40318692	40331715
INAVA_chr1_200889900_200920742	1/0	t0001	2396	108	30	17	42	2	16	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0002	2396	73	7	18	38	5	5	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0003	2396	47	1	10	32	2	2	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0004	2396	36	0	2	33	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/1	t0005	2396	31	3	9	8	6	4	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0006	2394	22	2	5	12	0	3	copy fasta	INAVA	chr1	200889900	200920742