JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
INAVA_chr1_200889900_200920742	0/0	t0007	2396	15	0	7	8	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0008	2373	14	12	1	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0009	2396	11	0	3	8	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0010	2396	8	3	0	3	1	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0011	2396	7	7	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0012	2396	7	6	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0013	2396	5	0	0	5	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0014	2396	5	5	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0015	2396	4	4	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0016	2396	3	3	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0017	2396	3	3	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0018	2396	3	3	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0019	2394	3	0	0	3	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0020	2396	3	0	0	0	0	3	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0021	2396	2	0	0	0	0	2	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0022	2396	2	0	0	2	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0023	2396	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0024	2396	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0025	2396	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0026	2396	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0027	2396	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0028	2396	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0029	2396	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0030	2396	1	0	0	1	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0031	2396	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0032	2396	1	1	0	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0033	2396	1	0	1	0	0	0	copy fasta	INAVA	chr1	200889900	200920742
INAVA_chr1_200889900_200920742	0/0	t0034	2396	1	0	0	0	0	1	copy fasta	INAVA	chr1	200889900	200920742
INA_chr10_103272138_103295346	1/0	t0001	1752	219	61	35	98	6	18	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/1	t0002	1752	183	26	28	96	8	24	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0003	1752	11	4	3	0	2	2	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0004	1752	1	1	0	0	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0005	1752	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0006	1752	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0007	1752	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INA_chr10_103272138_103295346	0/0	t0008	1752	1	0	0	1	0	0	copy fasta	INA	chr10	103272138	103295346
INCA1_chr17_4983130_5002522	1/0	t0001	341	366	80	71	165	12	37	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/1	t0002	341	30	4	5	15	4	1	copy fasta	INCA1	chr17	4983130	5002522
INCA1_chr17_4983130_5002522	0/0	t0003	341	2	2	0	0	0	0	copy fasta	INCA1	chr17	4983130	5002522
INCENP_chr11_62119011_62158169	1/0	t0001	1358	252	63	37	121	7	23	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0002	1358	47	13	12	15	2	5	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/1	t0003	1358	31	3	14	6	6	1	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0004	1358	13	13	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0005	1358	7	0	5	0	1	1	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0006	1358	3	0	1	0	0	2	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0007	1358	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0008	1358	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0009	1358	1	0	1	0	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0010	1358	1	0	0	1	0	0	copy fasta	INCENP	chr11	62119011	62158169
INCENP_chr11_62119011_62158169	0/0	t0011	1358	1	1	0	0	0	0	copy fasta	INCENP	chr11	62119011	62158169